Pcal033179.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- nfxl1
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004185.1:337-3310[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 1.9e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 18 0.42 7.2e+03 -1.9 0.6 4 10 161 167 161 167 0.93 3 18 5.6e-08 0.00097 20.0 15.1 1 18 175 191 175 192 0.98 4 18 1.5e-07 0.0026 18.7 14.2 3 18 230 245 218 246 0.92 5 18 1.5 2.6e+04 -3.7 1.7 6 10 271 275 271 275 0.93 6 18 8.3e-06 0.14 13.1 11.1 1 19 281 300 281 300 0.93 7 18 0.00014 2.4 9.2 8.3 1 18 336 353 336 354 0.97 8 18 0.0049 85 4.2 7.3 1 12 388 399 388 399 0.94 9 18 1.2 2e+04 -3.4 1.4 6 10 409 413 408 413 0.88 10 18 9e-08 0.0016 19.4 12.9 1 19 419 437 419 437 0.91 11 18 0.0001 1.8 9.6 9.8 9 19 485 495 483 495 0.90 12 18 0.0018 32 5.6 7.4 1 12 505 515 505 515 0.95 13 18 0.95 1.6e+04 -3.1 3.7 14 18 547 551 547 552 0.88 14 18 0.0022 38 5.3 8.6 1 12 588 599 578 599 0.80 15 18 2 3.4e+04 -5.6 3.4 14 18 612 616 612 620 0.59 16 18 0.00015 2.7 9.0 18.2 3 19 629 645 628 645 0.92 17 18 0.00014 2.5 9.1 13.5 1 16 690 704 690 710 0.87 18 18 1.4 2.4e+04 -3.6 0.6 6 10 740 744 739 744 0.86
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAAGAAAGCTCAAGCACAAAATAAATTGTCAATTGAAAAACACTTGGAAGCCAATGCATCATTGAATTCATCGAGTGAAGACGAAGATGAAACGAATGAAGAAGATGTTCAAAATGTAGTAGATAAAGTATTATCAGCATACCAGGGACAAAGCATAGATGCAGAAAAAGTGATATCATACCTAGTGAATTCCTTTCAAAGTAGTAGTGCTGTTTGTTTAATATGTATATCAACTGTCAAGAAAATAGATCAGATATGGAACTGCGACAAATGCTATGCATTTCTACACATGTCTTGCATTCTACACTGGATCAACGACAGTTTGAGTTACAAACGGGCTAAAGGAATTACGCCAATCTGGGCATGTCCAAAATGCCGTATGGAATATGACCAGGATCAAATTCCAAGATCATACAAATGCTTCTGTAAAAAGATTGTAGATCCTCCGTATCAACCTTGGATCATTCCACATTCCTGCGGCGAGGCTTGTGGCAAGCCTCTACAACCGGAATGCGGTCACAAATGTGTATTGCTCTGTCATCCTGGTCCTTGTCCACCTTGTGCCAAGATGGTATCGATTAAATGTTATTGTGGCAAGCTACCGGCGCAGCCGCGACGTTGTAATGCTAAAGATTGGAGTTGCGGAACTATATGCAACAAAAAATATGAATCTTGCATGCACACTTGTAATAACTTGTGTCACACTGGAGAATGTCCCCCTTGCATAGAAACGGTGGTATTGAAATGCCGTTGTAAAAGTAACGAGAAGGTAGGAAAGTGCTACGAGGGGACATGGATTTGCGAAAAGCCTTGCAACAAGAGATTTTCTTGTAACGTACACAGCTGCGAGAGCACTTGCCATTTGTCCGGTGATTGTGGCAACTGCCCCTTAGAAAAAAACAGATGTTGTCCTTGTGGAAAAAAACGATATGAAGTTTCATGTAGACAACAGCAAGTGCCAACATGCGGCGATACATGTGGCAAGTTATTAGATTGCGGATCGCACTTCTGCAACATGAGATGCCACACCGATCGCTGTGGCCAATGCTTGGAAGTGGTAACGAAAGCGTGCAGATGCGGAAGCTACACGAAAGAGATTGCCTGCGTGAAAGAGTTTCACTGTAACAAGAAATGCATGCAAATGCGCTTGTGTGGTAGACACTTATGTAACAGAAAATGCTGCGACTGTGTGTCGAGGAACGTGTCCAATCCATGCGAAAAGACGTGCGAGAACACCCTCAACTGCCGTAAACACAAGTGTGCCGCACCGTGTCATAGCGGTCCTTGCTATCCATGCACCAGAACGGACGTCATACAATGTCGATGCGGCAGCAGTAAGATAACGGTGCCATGTGGTACCAGGAAGAGGATCAGGCCACCACCATGTAATAAATCCTGTAAGATTCCACCTATTTGCCATCACAGTAAAAGGGAAACGCACAAATGTCATCAAGGCCCATGTCCACCGTGCAAAAAGATCTGCGGACTGACACATAAAAGATGTGGTCACTCTTGCCCGGCTACTTGTCATACCAAAGTCTGGGTAAAAGCGAAGACAAATGGGGTAAAAGCACAACCTATTGGACCTTGGGAAAAACCGAAGGACGTTATGGAGTTAAAGACTTTACCATGTCCATCGTGCGAGGTTTCTGTATCTGTAACTTGTCTTGGTGGCCATGAAACACGCCCTTGGCCGTGTCATATGTCGAAGCCAAGTTCCTGTGGCAGACTCTGTGGCCAGCTACTGCCGTGCAAGAATCACACCTGCGAATTGACTTGTCACAAAGTACAAACTTCTGATGACGAGTCTGACAGCAGTATTCCATGCATGGAATGTGAGAAAGAATGCAAGTTTGCACGACCAACGGGTTGTACGCATACGTGTCCGCAACCTTGTCATCCAGCACCATGTAAACCATGCAAACAACTGATACGAATCTCTTGTCATTGTGGTATCAGTACCCTTTATCGGCACTGTGTAAACTTGACGTCTGCAACGAGCAAGGAACGAGACGAATTACTCAAATGTGGAAACCAATGCCCCAAAAATTATTCATGCGGTCACCGTTGCATTAACGATTGTCATCCAGGAGAATGCAAAGGCGGGGAAGAATGCAACAAAAAAGTCAGATTATGGTGTAAATGTAAACGAATCAAGAAGGACTTTCTTTGTTCGTTTCTTCAAAAAGAACAGCTTACTGTAGAGTGCGATAGCGTGTGTGAATCATTGAAAAATGAAAAAAAGATAGCCCAAGAAACTATGATAGCGAAGAAGCTTGAAGAAGAGAAGCTACGCAATCAGGAAGAAATTGAGAAATTTGAAAAAAAATTTAAACCACGGCGAAAGCGAAAGGATAAGTACGAGAATTCGAAACAGTTCCGAGAAAACGCAAGAAATAAATGTTGGAATGCATGGATTTTAGCGATTATTGTAAGCTTGATAGGAATAATAATAGTATATATGACCGTACCAGACTTAAGTGTATTTGGAATGAGCTGA
- Protein Sequence
- MQKFKKAQAQNKLSIEKHLEANASLNSSSEDEDETNEEDVQNVVDKVLSAYQGQSIDAEKVISYLVNSFQSSSAVCLICISTVKKIDQIWNCDKCYAFLHMSCILHWINDSLSYKRAKGITPIWACPKCRMEYDQDQIPRSYKCFCKKIVDPPYQPWIIPHSCGEACGKPLQPECGHKCVLLCHPGPCPPCAKMVSIKCYCGKLPAQPRRCNAKDWSCGTICNKKYESCMHTCNNLCHTGECPPCIETVVLKCRCKSNEKVGKCYEGTWICEKPCNKRFSCNVHSCESTCHLSGDCGNCPLEKNRCCPCGKKRYEVSCRQQQVPTCGDTCGKLLDCGSHFCNMRCHTDRCGQCLEVVTKACRCGSYTKEIACVKEFHCNKKCMQMRLCGRHLCNRKCCDCVSRNVSNPCEKTCENTLNCRKHKCAAPCHSGPCYPCTRTDVIQCRCGSSKITVPCGTRKRIRPPPCNKSCKIPPICHHSKRETHKCHQGPCPPCKKICGLTHKRCGHSCPATCHTKVWVKAKTNGVKAQPIGPWEKPKDVMELKTLPCPSCEVSVSVTCLGGHETRPWPCHMSKPSSCGRLCGQLLPCKNHTCELTCHKVQTSDDESDSSIPCMECEKECKFARPTGCTHTCPQPCHPAPCKPCKQLIRISCHCGISTLYRHCVNLTSATSKERDELLKCGNQCPKNYSCGHRCINDCHPGECKGGEECNKKVRLWCKCKRIKKDFLCSFLQKEQLTVECDSVCESLKNEKKIAQETMIAKKLEEEKLRNQEEIEKFEKKFKPRRKRKDKYENSKQFRENARNKCWNAWILAIIVSLIGIIIVYMTVPDLSVFGMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476621;
- 90% Identity
- iTF_01476621;
- 80% Identity
- -