Pcal031197.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- ZFX
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004121.1:39094-44053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 2.3e+02 3.5 0.1 3 23 15 35 14 35 0.94 2 13 3 4.4e+02 2.6 3.8 1 23 846 869 846 869 0.81 3 13 9.1e-05 0.014 16.8 1.5 3 23 957 978 955 978 0.96 4 13 0.0022 0.32 12.4 0.2 2 23 991 1012 990 1012 0.97 5 13 1.7e-05 0.0025 19.1 2.3 2 23 1015 1036 1014 1036 0.97 6 13 0.0021 0.31 12.5 0.3 1 23 1042 1064 1042 1064 0.96 7 13 4e-05 0.006 17.9 4.3 2 23 1071 1092 1070 1093 0.95 8 13 0.1 15 7.2 3.7 5 23 1106 1124 1105 1124 0.97 9 13 2.1e-05 0.0031 18.8 1.5 3 23 1131 1152 1130 1152 0.97 10 13 0.0095 1.4 10.4 0.3 2 23 1168 1188 1167 1188 0.97 11 13 6.3e-05 0.0093 17.3 0.7 1 20 1194 1213 1194 1216 0.92 12 13 0.00011 0.016 16.5 2.9 1 23 1224 1246 1224 1246 0.99 13 13 0.0022 0.32 12.4 3.2 1 23 1252 1274 1252 1274 0.97
Sequence Information
- Coding Sequence
- ATGGAGCTCAACGGTGCGGGAACGCCCGTCGGGGCCGTGGCTTGTCCCGTGTGTACTCTTTATTTACGCGAGGGCATCAGTCTGCAAAAACATCTGGACACTCATCCCAAGGAACAGACGCCTCAAGCGTCGTCCCAGGTCTCGCAGAATGCGCATATTTCTACTCATTCACCATATCCTGTAGGACCTATCTTCGAATGTCCGCCCATAAGCACCATGATGCCACCGCAGTTCACCTCATTCAGCTATCAGCAATTTGTGAACAATGGGACCATGATGATACCGCAGTACGCGATGGCGCCGCAAGCCAATCAGATGATGCAGATGCTGTATAATCCATATGGTATGTACCAACAGCAAATACCCACCGTCCAAATGATCTCACCAGTTGCAGCTATTCCTGGCGCGACGACGAGGGCCCGACCAGTAGTCACGGTGGCTGGGGAGAGCAACGTCAGAACCCTGACAGTTCCTGTAAATAGTCCTGAGCCGAAGCAGATTCTGCCCGAGATTCTACCGGATACGGAGTCCGAGGCTGGACAAGTTATACCGGATGTGAGTCTCTCGGCCTCGCCGGTGTTGCAGAACGAGGATACATCCATCAGGGTGAGGGAGGAGAGCGACGACGGCAGTGCACTGCCGATTGATCACCGGGGGCAGCAGACGCAAAGTTCTACATCCGCTGGTGAAAGTACGGTGCAGCACGAATATAATACTATTACTAGATCTATTACAATCGCTTGCGCTATAGATAATACCGATGACAAAGTGGAGAGTGTGTTGCCGGACATGGTGGACGAGGAGCTGCCGACCAGCATTTCGACCACGGATATGCAATGTAAATCTGTGACGTACGAGCAACCGGAAACACAACAGTTTACGCAACAGATCATGGAGAAGGGGTATATAAGTGTATCCAGTAGAAAATCTAATGCGACGGCTGACGCCGACTCCGTGGCTTGCGATCGCGAGTCGGAAGTAATAAGCGACGAGAGACCCGTAAGTCATGGCAGCAACGTCAACAGTAATGTTGCATCTCCGCGGGATATAATAGCAATAGACGCGTTGAAAGACTCTGTCCAACCCGAGCTTAACTCGGTAGAAAAATTGGAGAATCTGATAACGATAATGGAAACGGAACTTAATAATGCTTCGCTGCAGAAAGACAGTAATGTGCAAAATGATCAGGAGAGATTGGTAGACGCGAAGGAGAAGAACGCCGCGGTGGATCGGGAGGAGAGTGTGATTCACGATACGGTAGTCACAATTCCAGGTGCCCACGAGAAAGATCACATATTGCCCGACATACAGGAGGAGAACAATGCGTGGAGCCCGAGTAATTACGTAGCCAATGAACTGAGAATGTTAGAGAAACGTTGTCGTTCGTTATGCAAAATAGACTGTTCGAAAATAAACGACACCCTAGAAAGAACTTTGGATAGAACTTTTCATTCAGATAATTATAAGTATAGTTTTTCAGCGCCTGCGTCCCCAATTGCGAGGAAGAAGGGTCGCAGAAACATCGATGAAATTCCCAGTCCACACACGCCCTTCGCGGATTGCGGTGTCCGTTCGCACACGCCATTGTCCACGATCAGCGGTATTTCCGTGTTGAGAGTCAGGAAGGATCTCAGCAAACCGTGCTCACCCACGTCCATACATTCGTTTCACCACGTCGACAGCGATAGCGTGACTCACGATGAGGACAGCAATGGCGTAGGTAACACCGCAGAAAAAGATCCGATTGACTGTTCTCAGGTAGAGGAGGAGAAAATCAAGACTGATCATCAGCGTCAGGAGGCACAGGTCGCGGTATGCGAGAACGTCGCGAAGGTTCAGGAATCGAGTAGCAGCTACACGTACCATCAGTCCGTGATTACCGAGCACGTCAGTTCGTTCCCCGTGATACACTCGCAATCGTCCGTCTTGATGCACGAGTCCTATTCCATCACGACGAGCACCAAGACGCAGAATCTCCTGAATCTCTCGGAGTCGATCAATCCTACAACTAGCGCCGAATCCAGGAGTTTTCACTCTGCCAAGTCGTTGATGCCGAAGCAATCGATGGAACTGCTCAACATAAATGAGGATGCTCACGCCGGGCCGATTAACGTCTTTGAATTCGACGGACTGCAAATATTAGTTCCTACTAGTACGTTTATAAGTGACTCGTCCCAGAAAGCGGTGAGCGCGACTAGCCAGCAATCCATGGCAAGTAGCGAGGGTGCGATAGGCATCGACGAGGAGGTGAAGAGTATTAATATGCGTGCCGATGAGACTATGCCGCCCAGAGGCGAATTGTCGGAACAAGAAAGCAATGGGTGCACGGAGCAGTCTGCATGGCAGTTGTACATGGGTCAAGAATCCTCACGCATGTCAACTTCTTATGATCTTTTGGCCCGAGAAAGCTGGGAAGAATCGGAAGGATCCGACAACGAGATCAGCGGGCCGTTGTTGGACAGTAGATCATTGGCTACGCATTTTACATCAAGTCTGTTTCTGGATCGAGACCGAAAGACACCGACCAAACGGACATTCAAGTGTTCTCACTGTAGCGAAGTGTTCGATTGCCCAAAGGAGCGCAGAGTTCACAGCACAACAGTTCACAAGGATGCGATGCCCAGTAGCAGTAGAGACCAATTGGATCAGCCAGAGGTAAAGGACATCAAATTGCTGGACAATCGTATAAACATGTTCGACGATATATTTGTGCCGAGTATACACATGCAACAGATGTATCATCATCAGCAACCTCTCTTGCATCAGCTGCAGCCGCCATCGCAGCCTGGCTCGGATGGTCTGACGAAGGCCGAAAATGACCAGAAGATCAGTGAGAATCTGGTGATACCCTCAAACATCGAGGTGATCTGCACGATATGCAATCAGCGATTCAACAGCGAGAAGTCTCTGCAGGCACATCATCGGCGCGTGCATATCGCTGATGTAAACAAACGCATACGCGAGACTTCCAAATGCCAGATATGCAATGAAGAGTTCCCATCAGTGTTCCTATTCAACGCCCACTTGAAGATACATCCGTTAGAATGCGGACAATGCGGCAAGTATTTCTACCGGAAGCAGAACTTTAAGCTCCATATGAAACGACACCTGGGCATCAAGCCGTTCCCGTGCACCGTGTGCGACAAGGCGTTCCTTACCAAACAGAAGTTAGAGGAGCATACCAACGGTCACACCGGTAACGCGCCCGTTCGTTGTAGCCTGTGCAACGAGACCTTCCGTAGATACTCGAATTTGACTCAGCACAAAAACAGACACCATCTTAATATCAAGAAGAAGCTCAAAGACTATATATGCCACTGCGGTGAGGTGTTTCATACGAAAAAAAAACTCGCCTGGCACAAGGAGACTCACGATGAGAAGCCCAAGGCGTGCACGTATTGCAATGAGCGATTCATCCACATGGCCAGCCTGACGCGTCACATGCGTCGCGCTCACAATCGCCGATTCGTGCCCGATGCCCAGCGCGAAAGTGAGAACGTCGAGTGCCCAATTTGCAAGTGTATCTACCTGCGATCCTCGCTGGCGGTGCATATGCGAGTGCATAACGGGGAACGGCCGTACGAGTGTCAGGTCTGCTCCAAGGCGTTCAGTACCAAATGGAATCTGCAGCTGCATAAATGGACTCATGCGGCGCGCAGCACCAAGCCGTTCAAATGTACTCAGTGCAGCGCGGCGTTCTATCGTCACAGCGATTACACGGCGCACATGAATTCCCATCGGAACGTGCGGCCGTACACGTGCAACTATTGCGGCGCGCAGTTCATCCGCAAATACAATTGCCTGCGGCACGTAAAGGAGCACGAGGAGAACAAGGC
- Protein Sequence
- MELNGAGTPVGAVACPVCTLYLREGISLQKHLDTHPKEQTPQASSQVSQNAHISTHSPYPVGPIFECPPISTMMPPQFTSFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQIPTVQMISPVAAIPGATTRARPVVTVAGESNVRTLTVPVNSPEPKQILPEILPDTESEAGQVIPDVSLSASPVLQNEDTSIRVREESDDGSALPIDHRGQQTQSSTSAGESTVQHEYNTITRSITIACAIDNTDDKVESVLPDMVDEELPTSISTTDMQCKSVTYEQPETQQFTQQIMEKGYISVSSRKSNATADADSVACDRESEVISDERPVSHGSNVNSNVASPRDIIAIDALKDSVQPELNSVEKLENLITIMETELNNASLQKDSNVQNDQERLVDAKEKNAAVDREESVIHDTVVTIPGAHEKDHILPDIQEENNAWSPSNYVANELRMLEKRCRSLCKIDCSKINDTLERTLDRTFHSDNYKYSFSAPASPIARKKGRRNIDEIPSPHTPFADCGVRSHTPLSTISGISVLRVRKDLSKPCSPTSIHSFHHVDSDSVTHDEDSNGVGNTAEKDPIDCSQVEEEKIKTDHQRQEAQVAVCENVAKVQESSSSYTYHQSVITEHVSSFPVIHSQSSVLMHESYSITTSTKTQNLLNLSESINPTTSAESRSFHSAKSLMPKQSMELLNINEDAHAGPINVFEFDGLQILVPTSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKDAMPSSSRDQLDQPEVKDIKLLDNRINMFDDIFVPSIHMQQMYHHQQPLLHQLQPPSQPGSDGLTKAENDQKISENLVIPSNIEVICTICNQRFNSEKSLQAHHRRVHIADVNKRIRETSKCQICNEEFPSVFLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLEEHTNGHTGNAPVRCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCTQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523563;
- 90% Identity
- -
- 80% Identity
- -