Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010004288.1:28542-32101[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.031 4.6 8.8 1.1 3 23 250 270 250 270 0.91

2 12 0.00015 0.022 16.1 0.4 3 23 313 334 312 334 0.96

3 12 0.00035 0.053 14.9 2.0 3 23 346 366 344 366 0.95

4 12 2.3e-07 3.4e-05 24.9 1.0 2 23 408 429 407 429 0.97

5 12 0.00041 0.062 14.7 0.3 1 23 434 457 434 457 0.92

6 12 1.5 2.2e+02 3.5 1.8 2 23 525 546 525 546 0.95

7 12 3e-06 0.00045 21.4 1.0 1 23 554 576 554 576 0.97

8 12 0.46 68 5.1 0.2 5 20 592 607 591 608 0.91

9 12 0.006 0.9 11.0 1.3 1 22 612 633 612 633 0.93

10 12 4.1e-05 0.0061 17.9 0.5 1 23 659 681 659 681 0.99

11 12 0.32 47 5.6 0.0 1 23 744 767 744 767 0.97

12 12 7.5e-07 0.00011 23.3 4.8 1 23 772 795 772 795 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.031	4.6	8.8	1.1	3	23	250	270	250	270	0.91
2	12	0.00015	0.022	16.1	0.4	3	23	313	334	312	334	0.96
3	12	0.00035	0.053	14.9	2.0	3	23	346	366	344	366	0.95
4	12	2.3e-07	3.4e-05	24.9	1.0	2	23	408	429	407	429	0.97
5	12	0.00041	0.062	14.7	0.3	1	23	434	457	434	457	0.92
6	12	1.5	2.2e+02	3.5	1.8	2	23	525	546	525	546	0.95
7	12	3e-06	0.00045	21.4	1.0	1	23	554	576	554	576	0.97
8	12	0.46	68	5.1	0.2	5	20	592	607	591	608	0.91
9	12	0.006	0.9	11.0	1.3	1	22	612	633	612	633	0.93
10	12	4.1e-05	0.0061	17.9	0.5	1	23	659	681	659	681	0.99
11	12	0.32	47	5.6	0.0	1	23	744	767	744	767	0.97
12	12	7.5e-07	0.00011	23.3	4.8	1	23	772	795	772	795	0.98

Sequence Information

Coding Sequence: ATGGCCGCGGACGGCAATTGGGACAAGGTCTGCCGGCTCTGCTTGCAGGAGAAGAACGAGATGCTGCCCATCTTCGGCAACGAGGCTGTGCAGCGCAAAGTGGTGCAGAAGCTGCGCGCCTGTCTACCCGTGCTTGTGTACAAAACTGATCCGCTGCCAAAGCAGATCTGTCAGTTCTGCGCGGCCAGGTTAGACGATGCGTACGGATTCAGACAGCACTGTTTGAATGTCTATAAAGAAATGCACGCTATATTGCTGAGGTATAAACAGACGGAATCTGTCCAGATATACCTTGACGCGATGAGAAACTCATCGGACCCATGCCAGGTGCAACTCTGTAAGTCTAGAGCCCCTCCACCGTTGGTTCCTTTATCAGGTGCCTTGCTCTTTGACGACTCGATTTCGATCGATCAAGCTAACCAAGATTATCAAAATATCTGCATGGAAATCTTACCTGAATTGCCATGTGAAGTGGAAATTAAGGAGGTGAACACAGATCCATATCTGAATGTCGAAAACACCATTTGCGAATCATCGAATAAAAAGTGTAAATTATCAGAGATGTTCGACACGGATATACAAATGAAAGTAGATACTGTTCCTATGTCTAACATGGAAGAAGCGAGAACTAAACAAGAGTATGTGAAAGAAGAGAAACAAACTAGTATTCTAGAGCAAGCATTAACTGGCAATCTGATAATGAATAATCATCAGCAATCTAGAGCAAAATTGACTTCCGAATGGTGGTGTTCACCATGTAACAATTATTACAAAACAAGAGATAGTCTAATGAAGCACATGCAGTTGCACTGCCCACGTGTATATAGTTGTAGGACGTGTCTATTGACCTTCGAATCCGTCGAGATCTTGGCGAAACACGAGGCCGATAATCATTTTAAAATCAGACTGGAGTTCACGGAAAATGATATGAAGGATTGCGAACAGTGCGATCGTCAGTTTGTGAGCTGGGAGATGTTGAGACAACACAGACTGCGTGATCATCAGACATTAATCGAAAATGGAAGCAACACGTGCTGTTCATTGTGTAATAGATCTTTCCCTACAGAAGAATCTTATCAAAAACACATTTTGTTACACCAGACAAACGCGACAATGTCAGAGAAATTATCTGTTTTGGAATCCACAATCACAAAAACAATGGAACGATCGAGGGAGATTAAAGGGGACGAACAATACTATGAAAATATAAAATATCCTCTTGTATGTCCCACTTGCGGAAAGATTTGTACGCAGCAAAGCGCATTATCGAATCACATGCGCACTCATGAACCGAAGAAATTCAAATGCGACATTTGTGGCCGGTCATTCACACTTTTTATACGCCTAACTGCGCACAGATTGGCCGAGCATAATAAAGAACCAATGATGTCACCAGTCTTGTCAGCAGTTGAGCAAGAGGAAGCCTTAAATGCCGAGAGAGAGGCAAGAGAAGCGAGAGAAGCTAAAACTCGCGTCAAAAAAGCTTACTCTGAGATGATAGAGAAAAATGATATTCCAATAGATGATGAATCCTCGGCTAAACGCGCCTTTGGTGGATTTAAAAATGTGGCTAGGTGTGCCATTTGCTTGCAATGGTTTAACGACCACACGACGATGTTAAAACACCTTCAAACGCATCAAACGGCAAATTATAATAGTTACGTGTGTCAAGTTTGTAATAAATCGTTTAAGGAACAGTCGCAGCTGTCTAAGCACGAGGCTCGCCATAAACGCTTAACGCTCGATAATGCCTCACTGTACACATTGTCCGCTGTTTGCAACAAATCATTCATGGATCAGACGCATCAAAAGACGCACACAGTGGATAAAACCTATCTCTGTGCGAAGTGTAATAAAATCTTTTTCAAACAAGTATCACTACTTGCCCACCAATGCACGGGCGGAGCAGTGCTTGGAAAAAAAACTGCAGCGAAGTCTCGGCAGAGAACACCGCCTCAGAATGGCAACAAGACGTACAAATGTTCGAAATGTGATGCGGCTTTTGCGAGCTCGCAATCACGGAACGCTCACATGAAAATGCACGCCGAATATATGCGCGGAAATGCGGCACAAACACAAGAAATTAAAGTCGATGATGAGCCAATGCCAGAACTGCATCCGGAGGTATTGTTGGAATACAACGGCTCCCCTATCGAGCCAAAGATTGAAATTAACGAGCAGAGTACACCTCCACCTCTTAAACGGACTCTCGTTAAAACCAGTAACGGATATCGATGCGGTGTATGCCGGTCACCATTCGTATTGAGGGAACTAGCCGTGGCGCATTTGAGATCCGCACATCCCGTAATGCCATATCAGTGTCCTTATTGCAAAAAACGTTTTATAACGCAATACTCATTCACCCATCATATCAAAACAGAGCATCCCGATGAGCCTGAAAAATAA
Protein Sequence: MAADGNWDKVCRLCLQEKNEMLPIFGNEAVQRKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYGFRQHCLNVYKEMHAILLRYKQTESVQIYLDAMRNSSDPCQVQLCKSRAPPPLVPLSGALLFDDSISIDQANQDYQNICMEILPELPCEVEIKEVNTDPYLNVENTICESSNKKCKLSEMFDTDIQMKVDTVPMSNMEEARTKQEYVKEEKQTSILEQALTGNLIMNNHQQSRAKLTSEWWCSPCNNYYKTRDSLMKHMQLHCPRVYSCRTCLLTFESVEILAKHEADNHFKIRLEFTENDMKDCEQCDRQFVSWEMLRQHRLRDHQTLIENGSNTCCSLCNRSFPTEESYQKHILLHQTNATMSEKLSVLESTITKTMERSREIKGDEQYYENIKYPLVCPTCGKICTQQSALSNHMRTHEPKKFKCDICGRSFTLFIRLTAHRLAEHNKEPMMSPVLSAVEQEEALNAEREAREAREAKTRVKKAYSEMIEKNDIPIDDESSAKRAFGGFKNVARCAICLQWFNDHTTMLKHLQTHQTANYNSYVCQVCNKSFKEQSQLSKHEARHKRLTLDNASLYTLSAVCNKSFMDQTHQKTHTVDKTYLCAKCNKIFFKQVSLLAHQCTGGAVLGKKTAAKSRQRTPPQNGNKTYKCSKCDAAFASSQSRNAHMKMHAEYMRGNAAQTQEIKVDDEPMPELHPEVLLEYNGSPIEPKIEINEQSTPPPLKRTLVKTSNGYRCGVCRSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFITQYSFTHHIKTEHPDEPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01228545;
90% Identity: iTF_01228545;
80% Identity: -