Pbar005230.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- -
- Assembly
- GCA_000187915.1
- Location
- NW:1052917-1057556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.021 1.4 8.8 1.1 3 23 257 277 257 277 0.91 2 13 7.4 5.2e+02 0.7 0.1 1 19 282 300 282 305 0.80 3 13 0.0001 0.007 16.1 0.4 3 23 320 341 319 341 0.96 4 13 0.00024 0.017 14.9 2.0 3 23 353 373 351 373 0.95 5 13 1.5e-07 1.1e-05 24.9 1.0 2 23 415 436 414 436 0.97 6 13 0.00028 0.019 14.7 0.3 1 23 441 464 441 464 0.92 7 13 0.99 69 3.5 1.8 2 23 532 553 532 553 0.95 8 13 2e-06 0.00014 21.4 1.0 1 23 561 583 561 583 0.97 9 13 0.31 21 5.1 0.2 5 20 599 614 598 615 0.91 10 13 0.004 0.28 11.0 1.3 1 22 619 640 619 640 0.93 11 13 1.7e-05 0.0012 18.5 0.6 1 23 669 691 669 691 0.99 12 13 0.21 15 5.6 0.0 1 23 754 777 754 777 0.97 13 13 5e-07 3.5e-05 23.3 4.8 1 23 782 805 782 805 0.98
Sequence Information
- Coding Sequence
- ATGGACGCGAATTACTACACGATGGCAGCGGACGGCAATTGGGACAAGGTCTGCCGGCTCTGCTTGCAGGAGAAGAACGAGATGCTGCCCATCTTCGGCAACGAGGCTGTGCAGCGCAAAGTGGTGCAGAAGCTGCGCGCCTGTCTACCCGTGCTTGTGTACAAAACTGATCCGCTGCCAAAGCAGATCTGTCAGTTCTGCGCGGCCAGGTTAGACGATGCATACGGATTCAGACAGCACTGTTTGAATGTCTATAAAGAAATGCACGCCGTATTGCTGAGGTATAAACAGACGGAATCTGTCCAGATATACCTTGACGCGATGAGAAACTCATCGGATCCATGCCAGGTGCAACTCTGTAAGTCTAGAGCCCCTCCACCGTTGGTTCCTTTATCAGGTGCCTTGCTCTTTGACGACTCGATTTCGATTGATCAAGCTAATCaagattatcaaaatatctgCATGGAAATCTTACCTGAATTGCCATGTGAAGTGGAAATTAAGGAGGTGAACACAGATCCATATCTGAATGTCGAAAACACCATTTGCGAATCATCGAATAAAAAGTGTAAATTATCAGAGATGTTCGACACGGATATACAAATGAAAGTAGATGCTGTTCCTATGTCTAACATGGAAGAAGCGAGAACTAAACAGGAGTATgtgaaagaagagaaacaaaCTAGTATTCTAGAGCAAGCATTAACTGGCAATCTGATAATGAATAATCATCAGCAATCTAGAGCAAAATTGACTTCAGAATGGTGGTGTTCACCatgtaacaattattacaaAACAAGGGATAGTCTAATGAAGCACATGCAGTTGCACTGCCCACGTGTATATAGTTGTAGGACGTGTCTATTGACCTTCGAATCCGTCGAGATCTTGGCGAAACACGAGGccgataatcattttaaaatcagACTGGAGTTCACGGAAAATGATATGAAGGATTGCGAACAGTGCGATCGTCAGTTTGTGAGCTGGGAGATGTTGAGACAACACAGATTGCGTGATCATCAGACATTAATCGAAAATGGAAGCAACACGTGCTGTTCATTGTGCAATAGATCTTTCCCTACAGAAGAATCTTATCAAAAACACATTTTGTTACACCAAACAAACGCGACAATGTCAGAGAAATTATCTGTTTTGGAATCCACAATCACAAAAACAATGGAACGATCAAAGGAGATTAAAGGGGACGAACAAtactatgaaaatataaaatatcctcTTGTATGTCCCACTTGCGGAAAGATTTGTACGCAGCAAAGCGCATTATCGAATCACATGCGCACTCATGAACCGAAGAAATTCAAATGCGACATTTGTGGCCGGTCATTCACACTTTTTATACGCCTAACTGCGCACAGATTGGCCGAGCATAATAAAGAACCAATGATGTCACCAGTTTTGTCAGCAGTTGAGCAAGAGGAAGCCTTAAATGCTGAGAGAGAGGCAAGAGAAGCGAGAGAAGCTAAAACTCGCGTCAAAAAAGCTTACTCTGAGatgatagagaaaaatgatattccAATAGATGATGAATCCCCGGCTAAACGCGCCTTTGGTGGATTTAAAAATGTGGCTAGATGCGCCATTTGCTTGCAATGGTTTAACGACCATACGACGATGTTAAAACACCTTCAAACGCATCAAACGGCAAATTATAATAGTTACGTGTGTCaagtttgtaataaatcatttaaggAACAGTCGCAGCTGTCTAAGCACGAGGCTCGTCATAAACGCTTAACGCTCGATAATGCCTCACTGTACACACTGTCCGCTGTTTGCAACAAATCATTCATGGATCAGACGCATCAAAAGACGCACACAGTGGATAAAACCTATCTCTGTGCGAagtgtaataaaatctttttcaaacaAGTATCACTACTTGCTCACCAATGCACGGGCGGAGCAGTTCATAAAGTGCTTGGAAAAAAACCTGCAGGGAAGTCTCGGCAGAAAACACCGTCTCAGAATGGCAACAAGACGTACAAATGTTCGAAATGTGATGCGGTTTTTGCGAGCTCGCAATCACGGAACGCTCATATGAAAATGCACGCTGAATATATGCGCGGAAATGCGGCACAAACACAAGAAATTAAAGTCGATGATGAGCCAATGCCAGAACTGCATCCGGAGGTATTGTTGGAATACAACGGCTCCCCTATCGAGCCGAAGATTGAAATTAACGAGCAGAGTACACCTCCACCTCTTAAACGGACTCTCGTTAAAACCAGTAACGGATATCGATGCGGTGTATGCCGGTCACCATTCGTATTGAGGGAACTAGCCGTGGCGCATTTGAGATCCGCACATCCCGTAATGCCATATCAGTGTCCTTATTGCAAAAAACGTTTTATAACGCAATACTCATTCACCCATCATATCAAAACGGAGCATCCCGATGAgcctgaaaaataa
- Protein Sequence
- MDANYYTMAADGNWDKVCRLCLQEKNEMLPIFGNEAVQRKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYGFRQHCLNVYKEMHAVLLRYKQTESVQIYLDAMRNSSDPCQVQLCKSRAPPPLVPLSGALLFDDSISIDQANQDYQNICMEILPELPCEVEIKEVNTDPYLNVENTICESSNKKCKLSEMFDTDIQMKVDAVPMSNMEEARTKQEYVKEEKQTSILEQALTGNLIMNNHQQSRAKLTSEWWCSPCNNYYKTRDSLMKHMQLHCPRVYSCRTCLLTFESVEILAKHEADNHFKIRLEFTENDMKDCEQCDRQFVSWEMLRQHRLRDHQTLIENGSNTCCSLCNRSFPTEESYQKHILLHQTNATMSEKLSVLESTITKTMERSKEIKGDEQYYENIKYPLVCPTCGKICTQQSALSNHMRTHEPKKFKCDICGRSFTLFIRLTAHRLAEHNKEPMMSPVLSAVEQEEALNAEREAREAREAKTRVKKAYSEMIEKNDIPIDDESPAKRAFGGFKNVARCAICLQWFNDHTTMLKHLQTHQTANYNSYVCQVCNKSFKEQSQLSKHEARHKRLTLDNASLYTLSAVCNKSFMDQTHQKTHTVDKTYLCAKCNKIFFKQVSLLAHQCTGGAVHKVLGKKPAGKSRQKTPSQNGNKTYKCSKCDAVFASSQSRNAHMKMHAEYMRGNAAQTQEIKVDDEPMPELHPEVLLEYNGSPIEPKIEINEQSTPPPLKRTLVKTSNGYRCGVCRSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFITQYSFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229222;
- 90% Identity
- iTF_01229222;
- 80% Identity
- -