Pcal005165.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- -
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010000078.1:217919-222412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.35 52 5.5 7.1 2 23 273 295 272 295 0.97 2 18 0.016 2.4 9.7 1.4 1 23 344 366 344 366 0.97 3 18 0.085 13 7.4 1.6 1 23 415 437 415 437 0.98 4 18 0.078 12 7.5 0.2 1 20 487 506 487 508 0.91 5 18 0.0088 1.3 10.5 1.6 1 23 548 570 548 570 0.98 6 18 2.9e-05 0.0043 18.3 0.3 1 23 614 636 614 636 0.97 7 18 0.00057 0.085 14.2 0.1 1 23 642 664 642 664 0.97 8 18 3.3e-05 0.0049 18.1 0.7 1 23 708 731 708 731 0.96 9 18 0.028 4.1 8.9 3.9 1 23 737 760 737 760 0.96 10 18 1.5e-05 0.0022 19.2 1.0 2 23 768 790 767 790 0.97 11 18 0.00026 0.038 15.3 0.0 1 23 798 820 798 820 0.92 12 18 0.12 18 6.9 0.2 1 20 880 899 880 899 0.97 13 18 0.0018 0.27 12.7 0.1 2 23 919 940 918 940 0.96 14 18 2.9e-05 0.0043 18.3 1.2 1 23 953 975 953 975 0.97 15 18 9e-05 0.013 16.8 3.0 1 23 997 1020 997 1020 0.95 16 18 0.0056 0.83 11.1 1.2 2 23 1079 1101 1078 1101 0.96 17 18 0.0018 0.27 12.6 0.7 1 23 1123 1146 1123 1146 0.91 18 18 0.0022 0.33 12.4 0.3 2 23 1235 1257 1235 1257 0.96
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGGAAACGTGGAGAGCGTGTGTAGACTATGTCTCTCCACGGACGGGCCCAGATCGTCGGTGTTTGCGGCGCAGGGCGAGGAGAAGGAAGACTCGTCCGGCATATCACTGGTCGCTAAAATTCAAGCCTGCCTGTCAATCCAAATTTCAACATCCGATAAAATATCTACATTGATATGTGACAATTGTATAAAAAGTGTTAACCAGTGGTATATTTATAAGGAGTCATGTCTGCGCTCTCAGGATAAACTACAAGAATGGCTAGCAAGTCAATCACAATCAAATCCTATGGTCATAACGATCAAGGATGAACCAATGGATTTTGATTATGAAGATAAGGTTGAGATTATTTCAGAGACCAATGATTTGGAACAATCACAATCATCAATTCAAACAGTGGAAAATGAGGAATCCAATGAGAAAGTGAAAGAAGTAACAGATAACAGCAATGCAACAGATACAAGTAAAGAGTCTGAACTGATTCCGGAATTGGAAACTCCGGTGGAAATTCCGATGGAGGCTGTCAAGGAAGGTCAAACGGACCAACAGAATGTTGTAATATTACGTTCCATTAAAAGAGAACCACAGGATGATGATGATACCGATTGTACAATAGAACTAGAATCTACGAATAGCAACGAATTGCTATTGAATCCTATGGCAGTCAACGAGACGGAGGATACAGTTATGGAGGCCGATTCCACGCAAAAGTCTAACACAGTTGCTGCACCACCCAAAAAGAAACTGCGACGCGGTCCTCATACACATTTCCGAGGCACGCGCGTCTTTAAACAAAAGTGTACACACTGCCAAATATTCCTGCACTCCAAATATACATACATAAAACATATGAAGAGATTTCACAGTAAGGAAAATGGTACTGAAAATTTGGAGACACAAAACGACGACGAGGAGATGATCGAGGATTTGGAAGATGAACTGGTTAGTATGGAGAAAGATTCGCCGTTGACGCAAGTTCAACAAGATATTATTAGCCAGCTGAAAACCTTCTCTTGCTATTCTTGTGAACAAACCTTTAACGATCGGCGTAGCACGCTCGCACATATACGTCAACATCTACCGGACTTGAGACCATACACATGTATCGCCTGCCTAACAGAATTTTCAGATCGATCAATGTATCAGCTACATTGTAGCGCATCTTTCGAATGTGCTATGAAGATTGCTTTGGTCATACCGAAGCATGGCGACGAACGGTACTTTACATGCAATATGTGTCTGCGCTCGATGCAAGATAGGAAGGAGCTACTGAAACATTTGTCGAAACATTCCGACAAGCAGTACGAAGAAATGATGTCGCCAGCGTCCAGAGCTCCGCCCAAATTGAAACCAATGGTACCGCCGATGGTGCCATCCAGAAATAGTATGAGTGATAAGACCAATGGACCTTATAAAAACGGCGATCCGGCGCACAATCATGCTTGCGATCTGTGCGGCATGATTTACCGGTACCGACCTAATATGCTCAAACACAAAGAGATGTGTATGCGACTGAAGCCGGAAAACAGAACGTTATACAAGTGCGTGTATTGTTACATGACGTTCCTCGTGTTTAAGAAGTTTCATTGTCACATTACAGCTGATCACAAAAAGAAGGATTTCACCTGCGCAGTATGCTATTCCGAATTCCGATCGCCTAGCGATTTCTTAACCCATCACGAGACCCATCGAGAAATGATGCAAGATAATCAGCAAATGCAGCATCATGACACATCGCAAGACATGGTACAAATTCCACTGAAAGAACGGAACGCTTACAAAGGAAACGCTAAATCAAGAATCAGTAATAATCAGAAGTACAGCTGCCCACTCTGTACTCAAGTTTTTTCCACGAGAGTCGAACTAAATGAACATCAAAGTCTTCACCTCAAAGTAAAGATATACTCATGCGCCATTTGCCGTAGCATGTTCAGTAGTGCTGGCGCCTTAGAAATTCACATGAAGGATCACGGTATCGAGGACCCGAACGAGCGAAATGCTAATATCTCCTGCGTGGAATATGGCAACTTGGATAAAGACATGAGAATCGAAGAAGAATCAATGAACGACAGTGCCATTTCAGATCCTGGTACACAAGTTCACAAGTGTGGCAAGTGTGGTAAGATATTATCTAATTACGCTAATCTCCGACGACATGCTAAAATCGCGCACCGAAACATTAAAATCTACGATTGTGTCGAGTGTTCGCGACTGTTTATGCATAAAGACCTGTACAATCATCATATGCAGATCAAGCATAACTCTACAAAAACAATGCTACAATGCCCGCAATGCCCCAAGAGTTTTGTCTTCCAATCAAACTTCTCTTATCACTTCCGTACTGTTCACGTTGAAAAATCGCAGAACGGTTACGCCTGCGATATCTGTGGCAAAGTCTTCGTTGAAGAAACTTCCTTGAAGATACACAAAGGTTGGCACAATCGCGCCAACTCACGTTTAAGCACTCGATTTATCTTAGGCAATCAGAAGGCGTCCACTGACGCGCAGAAGGAATCGAGCAATATCGAGTCCGGTGAGAATTCAGAACGGCCAGCGAGAGCGCGAAAGTCCTTCCCCAATCCCCCGCCTCAATCAACCACCAAGTCACCAGGAAATTTCCAATGTCAAGTATGCAATGATAACTTTAACGACGTTACGGAGCTAAGAACTCATTTATGGGACGTTCATTGCGCTCGCAACAAACCTGAAAAGAATTATTCTACTAATGAACTTCAATGCGAACTTTGCACAAACATTTTCCCCGATCAGGAAACCCTGGCGTCTCATATGCAATGGCACAAAGCTAATCCTATTCTCAGCGATATACAAAAAGTGTTCTCCTGCGATGTATGCGGCAAGTCTTACAGTTCGAAGAAGGTCCTATGGAAACACAAGAAGCTTCACAAAGCTACTGTTGTTGCCTCGATCAAATTTCAATCCTTAGCTAGGAAACCAATGGCTACACAATACCTGTGCAACTTCTGCCGCAAAGTTTTCTCGAGCAACCAGTCTCTGCAACGACACAAACTCACGTTCCATAGTGATTTGAATCAACAACGCACGCAACCACAGCTGTATAATAGCACTCGAAGATTATCAATTGAAAACGAAACAAAGGCAAAGCGTCCGAAACTTGAGATAGAAAATGATAATTCGCAGATCAAGGTGGCACCTTTCTCCATGGACTTTGCCGGTGAGAAAAAGAAACCGGTCAAGTGTCATCTATGCAAAAAAATGTTTCCTGGCATGAGCGCATTGTACATACACAAGCAAATGACTCACAAAACCCGTGCGAGGAAAAGCTTGACGCTCGAGTGTATACCGCTGCCAACGGACGATGGCAATTATTTATGCAATATCTGCTTTAAGGAGTTTCCTGGCCTGTCAAATCTGCGACAGCATTTCACAATCAAGCATAAGAAAACAGCCGAAGTCGGCAATTCGTCGAGCAATAACAGATTATCACAACTCTCAACACCCGAACGATCAAGGGATTACGAATTGGCCTACAATAATATAATGTATAGCTGCAAGCTGTGTAAGCAGTGCCACGTCTTCAACAAAGACTCCATTATGAAACATATCACCAACGTGCATAACGCAGTGTATGAGGCCGACAGTAAAATGTTCCACAGAGAGGTCGATCTGGGCGCTTACGTGGTGAAGGATGCGATAGGAGCTACCTGTCCGCAATGCGATGTCAAATATCCCAACAACAGGGCTCTGAAGATACATTATATTAAATTCCATGAGAATTAA
- Protein Sequence
- MDEDVVEIGNVESVCRLCLSTDGPRSSVFAAQGEEKEDSSGISLVAKIQACLSIQISTSDKISTLICDNCIKSVNQWYIYKESCLRSQDKLQEWLASQSQSNPMVITIKDEPMDFDYEDKVEIISETNDLEQSQSSIQTVENEESNEKVKEVTDNSNATDTSKESELIPELETPVEIPMEAVKEGQTDQQNVVILRSIKREPQDDDDTDCTIELESTNSNELLLNPMAVNETEDTVMEADSTQKSNTVAAPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMKRFHSKENGTENLETQNDDEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLAHIRQHLPDLRPYTCIACLTEFSDRSMYQLHCSASFECAMKIALVIPKHGDERYFTCNMCLRSMQDRKELLKHLSKHSDKQYEEMMSPASRAPPKLKPMVPPMVPSRNSMSDKTNGPYKNGDPAHNHACDLCGMIYRYRPNMLKHKEMCMRLKPENRTLYKCVYCYMTFLVFKKFHCHITADHKKKDFTCAVCYSEFRSPSDFLTHHETHREMMQDNQQMQHHDTSQDMVQIPLKERNAYKGNAKSRISNNQKYSCPLCTQVFSTRVELNEHQSLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGNLDKDMRIEEESMNDSAISDPGTQVHKCGKCGKILSNYANLRRHAKIAHRNIKIYDCVECSRLFMHKDLYNHHMQIKHNSTKTMLQCPQCPKSFVFQSNFSYHFRTVHVEKSQNGYACDICGKVFVEETSLKIHKGWHNRANSRLSTRFILGNQKASTDAQKESSNIESGENSERPARARKSFPNPPPQSTTKSPGNFQCQVCNDNFNDVTELRTHLWDVHCARNKPEKNYSTNELQCELCTNIFPDQETLASHMQWHKANPILSDIQKVFSCDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQYLCNFCRKVFSSNQSLQRHKLTFHSDLNQQRTQPQLYNSTRRLSIENETKAKRPKLEIENDNSQIKVAPFSMDFAGEKKKPVKCHLCKKMFPGMSALYIHKQMTHKTRARKSLTLECIPLPTDDGNYLCNICFKEFPGLSNLRQHFTIKHKKTAEVGNSSSNNRLSQLSTPERSRDYELAYNNIMYSCKLCKQCHVFNKDSIMKHITNVHNAVYEADSKMFHREVDLGAYVVKDAIGATCPQCDVKYPNNRALKIHYIKFHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228534;
- 90% Identity
- iTF_01228534;
- 80% Identity
- -