Pbar004366.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- -
- Assembly
- GCA_000187915.1
- Location
- NW:380965-387715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.23 16 5.5 7.1 2 23 280 302 279 302 0.97 2 18 0.011 0.75 9.7 1.4 1 23 351 373 351 373 0.97 3 18 0.056 3.9 7.4 1.6 1 23 422 444 422 444 0.98 4 18 0.052 3.6 7.5 0.2 1 20 495 514 495 516 0.91 5 18 0.0058 0.41 10.5 1.6 1 23 556 578 556 578 0.98 6 18 1.9e-05 0.0013 18.3 0.3 1 23 622 644 622 644 0.97 7 18 0.00038 0.027 14.2 0.1 1 23 650 672 650 672 0.97 8 18 2.2e-05 0.0015 18.1 0.7 1 23 716 739 716 739 0.96 9 18 0.018 1.3 8.9 3.9 1 23 745 768 745 768 0.96 10 18 9.9e-06 0.00069 19.2 1.0 2 23 776 798 775 798 0.97 11 18 0.00017 0.012 15.3 0.0 1 23 806 828 806 828 0.92 12 18 0.08 5.6 6.9 0.2 1 20 888 907 888 907 0.97 13 18 0.0012 0.083 12.7 0.1 2 23 927 948 926 948 0.96 14 18 1.9e-05 0.0013 18.3 1.2 1 23 961 983 961 983 0.97 15 18 6e-05 0.0042 16.8 3.0 1 23 1005 1028 1005 1028 0.95 16 18 0.0037 0.26 11.1 1.2 2 23 1087 1109 1086 1109 0.96 17 18 0.0012 0.085 12.6 0.7 1 23 1131 1154 1131 1154 0.91 18 18 0.0015 0.1 12.4 0.3 2 23 1243 1265 1243 1265 0.96
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGGAAACGTGGAGAGCGTGTGTAGACTATGTCTCTCCACGGATGGGCCCAGATCGTCGGTGTTTGCGGCGCAGGGCGAGGAGAAGGAAGACTCGTCCGGCATATCACTGGTCGCTAAAATTCAAGCCTGCCTGTCAATCCAAatttcaaCATCCGATAAAATATCTACATTGATATGTGacaattgtataaaaagtGTTAACCAGTGGCATATTTATAAGGAGTCATGTCTGCGCTCTCAGGATAAACTACAAGAATGGCTAGCAAGTCAATCACAATCAAATCCTATGGTCATAACGATCAAGGATGAACCAATGGATTTTGATTATGAAGATAAGGTTGAGATTATTTCAGAGACCAATGATTTGGAACAATCaCAATCATCAATTCAAACAGTGGAAAATGAGGAATCCAATGAGAAAGTGAAAGAAGTAACAGATAACAATGCAACAGATACAAGTAAAGAGTCTGAACCGATTCCAGAATTGGAAACTCCGATGGAAACTCCGGTGAAAACTCCGGTGGAAATTTCGATGGAGGCTGTCAAGGAAGGTCAAACGGACCAACAGAATGTTGTAATATTACGTTCCATTAAAAGAGAACCACAGGATGATGATGATACCGATTGTACAATAGAACTAGAATCTACGAATAGCAACGAATTGCTATTGAATCCTATGGCAGTCAACGAGACGGAGGATACAGTTATGGAGGCCGATTCCACGCAAAAGTCTAACACGGTTGCTGCACCACCCAAAAAGAAACTGCGACGCGGTCCTCATACACATTTCCGAGGCACGCGCGTCTTTAAACAAAAGTGTACACACTGCCAAATATTCCTGCACTccaaatatacatacataaaacataTGAAGAGGTTTCACAGTAAGGAAAATGGCACTGAAAATTTGGAGACACAAAACGACGACGAGGAGATGATCGAGGATTTGGAAGATGAACTGGTTAGTATGGAGAAGGATTCGCCATTGACGCAAGTTCAACAAGATATTATTAGCCAGCTGAAAACTTTCTCTTGCTATTCTTGTGAACAAACCTTTAACGATCGGCGTAGCACGCTCGCACATATACGTCAACATCTACCGGACTTGAGACCATACACATGTATCGCCTGCCTAACAGAATTTTCAGATCGATCAATGTATCAGCTACATTGTAGCGCATCCTTCGAATGTGCTATGAAGATTGCTTTGGTTATACCGAAGCATGGCGACGAACGGTACTTTACATGCAATATGTGTCTGCGCTCGATGCAAGATAGGAAGGAGCTACTGAAACATTTGTCGAAACATTCCGACAAGCAGTACGAAGAAATGATGTCGCCAGCGCCCAGAGCTCCGCCCAAATTGAAACCAATGGTACCGCCGATGGTGCCATCCAGAAATAGTGGTATGAGTGATAAGACCAATGGACCTTATAAAAACGGCGATCCGGCGCACAATCATGCTTGCGATCTGTGCGGCATGATTTACCGGTACCGACCTAATATGCTCAAACACAAAGAGATGTGTATGCGACTGAAGCCGGAAAACAGAACGTTATACAAGTGCGTGTATTGTTACATGACGTTCCTCGTGTTTAAGAAGTTTCATTGTCACATTACAGCTGATCACAAAAAGAAGGATTTCACCTGCGCTGTATGCTATTCCGAATTCCGATCGCCTAGCGATTTCTTAACCCATCACGAGACCCATCGAGAAATGATGCAAGATAATCAGCAAATGCAGCATCATGACACATCGCAAGACATGGTTCAAATTCCACTGAAAGAACGGAACGCTACAAAGGAAATAGCTAAATCAAAAATCAGTAATAATCAGAAGTACAGCTGCCCACTCTGTACTCAAGTTTTTTCCACGAGAGTCGAACTAAATGAACATCAAAGTCTTCACCTCAAAGTAAAGATATACTCATGCGCCATTTGCCGTAGCATGTTCAGTAGTGCTGGCGCCTTAGAAATTCACATGAAGGATCACGGTATCGAGGACCCGAACGAGCGAAATGCTAATATCTCCTGCGTGGAATATGGCAACTTGGATAAAGACATGAGAATCGAAGAAGAATCAATGAACGACAGTGCCATTTCAGATCCTGGTACACAAGTTCACAAGTGTGGCAAGTGTGGTAAGATATTATCTAATTACGCTAATCTCCGACGACATGCTAAAATCGCGCACCGAAACATTAAAATCTACGATTGTGTCGAGTGTTCGCGACTGTTCATGCATAAAGACCTGTACAATCATCATATGCAGATCAAGCATAACTCTACAAAAACAATGCTACAATGCCCGCAATGCCCCAAGAGTTTTGTTTTCCAATCAAACTTCTCTTATCACTTCCGTACTGTCCACGTTGAAAAATCGCAGAACGGTTACGCCTGCGATATCTGTGGCAAAGTCTTCGTTGAAGAAACTTCCTTGAAGATACACAAAGGTTGGCACAATCGCGCCAATTCACGTTTAAGCACTCGATTTATCTTAGGCAATCAGAAGGCGTCCACTGACGCGCAGAAGGAATCGAGCAATATCGAGTCCGGTGAGAATTCAGAACGGCCACCGAGAGCACGAAAATCCTTCCCCAATCCCCCGCCTCAATCAACCACCAAGTCACCAGGAAATTTCCAATGTCAAGTATGCAATGATAACTTTAACGACGTTACGGAGCTAAGAACTCATTTATGGGACGTTCATTGCGCTCGCAACAAACCTGAAAAGAATTATTCTACTAATGAACTTCAATGCGAACTTTGCACAAACATTTTCCCCGATCAGGAAACCCTGGCGTCTCATATGCAATGGCACAAAGCTAATCCTATTCTCAGCGATATACAAAAAGTGTTCTCCTGCGATGTATGCGGCAAGTCTTACAGTTCGAAGAAGGTCCTATGGAAACACAAGAAGCTTCACAAAGCTACTGTTGTTGCCTCGATCAAATTTCAATCCTTAGCTAGGAAACCAATGGCTACACAATACCTGTGCAACTTCTGCCGCAAAGTTTTCTCGAGCAACCAGTCTCTGCAACGACACAAACTCACGTTCCATAGTGATTTGAATCAACAACGCACGCAACCACAGCTGTATAATAGCACTCGAAGATTATCAATTGAAAACGAAACAAAGGCAAAGCGCCCGAAACTTGagatagaaaatgataattcgCAGATTAAGGTGGCACCTTTCTCCATGGACTTTGCCGGTGAGAAAAAGAAACCGGTCAAGTGTCATctatgcaaaaaaatgtttcctgGCATGAGCGCATTGTACATACACAAGCAAATGACTCACAAAACCCGTGCGAGGAAAAGCTTGACGCTCGAGTGTATACCGCTGCCAACGGACGATGgcaattatttatgcaatatcTGCTTTAAGGAGTTTCCTGGCCTGTCAAATCTGCGACAGCATTTCACAATCAAGCATAAGAAAACAGCCGAAGTCGGCAATTCGTCGAGCAATAACAGATTATCACAACTCTCAACACCCGAACGATCAAGGGATTACGAATTGGcctacaataatataatgtatagcTGCAAGCTGTGTAAGCAGTGCCACGTCTTCAACAAAGACTCCATTATGAAACATATCACCAACGTGCATAACGCAGTGTATGAGGCCGACAGTAAAATGTTCCACAGAGAGGTCGATCTGAGCGCTTACGTGGTGAAGGATGCGATAGGAGCTACCTGTCCGCAATGCGATGTCAAATATCCCAACAACAGGGCTCTGaagatacattatattaaattccatGAGAATTAA
- Protein Sequence
- MDEDVVEIGNVESVCRLCLSTDGPRSSVFAAQGEEKEDSSGISLVAKIQACLSIQISTSDKISTLICDNCIKSVNQWHIYKESCLRSQDKLQEWLASQSQSNPMVITIKDEPMDFDYEDKVEIISETNDLEQSQSSIQTVENEESNEKVKEVTDNNATDTSKESEPIPELETPMETPVKTPVEISMEAVKEGQTDQQNVVILRSIKREPQDDDDTDCTIELESTNSNELLLNPMAVNETEDTVMEADSTQKSNTVAAPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMKRFHSKENGTENLETQNDDEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLAHIRQHLPDLRPYTCIACLTEFSDRSMYQLHCSASFECAMKIALVIPKHGDERYFTCNMCLRSMQDRKELLKHLSKHSDKQYEEMMSPAPRAPPKLKPMVPPMVPSRNSGMSDKTNGPYKNGDPAHNHACDLCGMIYRYRPNMLKHKEMCMRLKPENRTLYKCVYCYMTFLVFKKFHCHITADHKKKDFTCAVCYSEFRSPSDFLTHHETHREMMQDNQQMQHHDTSQDMVQIPLKERNATKEIAKSKISNNQKYSCPLCTQVFSTRVELNEHQSLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGNLDKDMRIEEESMNDSAISDPGTQVHKCGKCGKILSNYANLRRHAKIAHRNIKIYDCVECSRLFMHKDLYNHHMQIKHNSTKTMLQCPQCPKSFVFQSNFSYHFRTVHVEKSQNGYACDICGKVFVEETSLKIHKGWHNRANSRLSTRFILGNQKASTDAQKESSNIESGENSERPPRARKSFPNPPPQSTTKSPGNFQCQVCNDNFNDVTELRTHLWDVHCARNKPEKNYSTNELQCELCTNIFPDQETLASHMQWHKANPILSDIQKVFSCDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQYLCNFCRKVFSSNQSLQRHKLTFHSDLNQQRTQPQLYNSTRRLSIENETKAKRPKLEIENDNSQIKVAPFSMDFAGEKKKPVKCHLCKKMFPGMSALYIHKQMTHKTRARKSLTLECIPLPTDDGNYLCNICFKEFPGLSNLRQHFTIKHKKTAEVGNSSSNNRLSQLSTPERSRDYELAYNNIMYSCKLCKQCHVFNKDSIMKHITNVHNAVYEADSKMFHREVDLSAYVVKDAIGATCPQCDVKYPNNRALKIHYIKFHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229204;
- 90% Identity
- iTF_01229204;
- 80% Identity
- -