Pcal011039.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- -
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004378.1:43735-53410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 1.8e-05 0.0027 19.0 2.5 1 23 207 229 207 229 0.98 2 32 0.0099 1.5 10.4 3.7 1 23 252 275 252 275 0.96 3 32 0.00067 0.099 14.0 0.5 2 23 282 304 281 304 0.96 4 32 0.041 6.1 8.4 0.0 1 21 324 344 324 345 0.95 5 32 0.0011 0.16 13.4 0.2 2 23 440 461 439 461 0.95 6 32 0.00065 0.097 14.1 1.4 1 23 467 489 467 490 0.95 7 32 0.0002 0.03 15.7 0.2 1 23 560 583 560 583 0.96 8 32 0.44 65 5.2 1.4 1 23 589 612 589 612 0.95 9 32 0.14 21 6.7 1.4 1 23 625 647 625 647 0.97 10 32 3.8e-05 0.0056 18.0 0.9 3 23 692 713 691 713 0.96 11 32 7 1e+03 1.4 0.2 1 23 743 766 743 766 0.90 12 32 0.17 25 6.5 1.1 2 23 773 796 772 796 0.91 13 32 1.8 2.6e+02 3.3 0.0 2 23 805 827 805 827 0.90 14 32 0.02 3 9.4 0.0 2 23 834 856 833 856 0.93 15 32 9.8e-05 0.015 16.7 3.2 1 23 864 886 864 886 0.97 16 32 0.028 4.2 8.9 1.3 2 23 923 946 922 946 0.94 17 32 0.00023 0.034 15.5 3.3 1 23 949 972 949 972 0.97 18 32 0.00075 0.11 13.9 0.1 2 23 979 1001 978 1001 0.96 19 32 0.001 0.15 13.5 3.9 1 21 1028 1048 1028 1049 0.95 20 32 0.0029 0.44 12.0 1.8 2 23 1063 1084 1062 1085 0.93 21 32 0.39 58 5.3 1.1 1 23 1088 1111 1088 1111 0.94 22 32 0.029 4.3 8.9 2.1 2 23 1118 1141 1117 1141 0.90 23 32 3.3 5e+02 2.4 0.2 2 23 1149 1171 1149 1171 0.94 24 32 3.6 5.3e+02 2.3 0.0 2 23 1178 1200 1177 1200 0.88 25 32 0.25 37 6.0 2.7 2 23 1209 1231 1209 1231 0.96 26 32 0.31 46 5.6 0.6 2 23 1237 1259 1236 1259 0.92 27 32 0.018 2.7 9.5 0.1 1 23 1321 1344 1321 1344 0.95 28 32 9.7e-05 0.014 16.7 1.3 1 21 1372 1392 1372 1393 0.93 29 32 0.35 52 5.5 1.9 2 23 1493 1515 1492 1515 0.94 30 32 1 1.5e+02 4.0 0.4 2 23 1522 1544 1521 1544 0.94 31 32 0.76 1.1e+02 4.4 2.5 1 23 1555 1577 1555 1577 0.97 32 32 0.02 3 9.4 0.2 1 19 1581 1599 1581 1602 0.94
Sequence Information
- Coding Sequence
- ATGCACATATTCGGTCAGGAAGGCAGGAACCGTCAGCTTGTCGACAAGATCCAGACATGTTTGCCGTTCAAGATAGTGGAAGATGATCGTTTGCCAAAAGTTCTGTGTTATCGATGCATGTATAATTTGGAAAATTTTTATGACTTTAGAACTGCGTGTGTCAACGCAGCTGCTTGGTTGGAAAGAAATAGGCCGAAGGAAGGTACGAGTAATGACGGAGCAAATGACAACGCACAATCTAGTGAGATTCACGCAGAGTTTAAAGGAAAGGAAAACATGCCAGTACTTATACCAGAGGCACCCGTAGTCAATCCAAATGCGGCATTAGGTACACCACCGAGACTAAATTCGGATGGTGAAGCAGATCCCGAGATTGAAGAAATTCTCGATGCAAGTGAAGGTACGGACGAAGCTACGATGATTGATGATTACGAAGATCGACGATCAGAATATGAGATGGCATATGAGATGGACATGGAGACGAATCCTAGCGATTTTTTAGAAATGACTCCGATGGTAACCGAGGAAAATGAAGAGGAGTGCGGTGCGAATAACACGAGTGCAACGACGACTCAAGATGCTGTGATTTTTCCACATACATCACAGCAACACGAAGTCTATGTCTGTTCTCTATGCCATAAAGCATTTAGTTCAAAAGGTCACTTATCGCTACATGCAAGGATTCACGGAGGTGAGGGTGACGTGATCGGCGAGAGAGTAATTACTGACGATCACACTTCGTATCAACGACCGTATCAATGTGATCTTTGTCATAAATCATATTCTACTGCGAAGCACCGCTGGGGACATGTTTCTACGACACATCGAGGACATCCTGCGGTAACATGTGCGTACTGTTCTCGTATATACTCGACACGATATAACCTCGACGAACATATAAAATCGCGACATGCTGGTTTACCGCCACCTCCAGAATTATCGGTTCCTCCTTCTTGCACGGAAACTCGTTATCAATGCCAAACGTGTCCGTTGGTATATATGGATCTGGCAGATTTCAATGCACATCGTCAGATATGTATCCAAGAGCAACGTACAGATTTATTGGGGCAAACTGAAGGACAGAATAAGATTTTTGCCGACACGTCCGATATTTCGAGTGTAGATTCGGACGATGAGAACAAAGACTTTAGGAATGCTGAGGCTAAATTGGCTAAAAATCCGCAGCTAACTATATTAAAACAAGCGCTAACTAAAGGAGATAGTTTAAAAAGGAATTATGACGATGATGACTCGACATCTAATAGCAAACCGAAAAAAATAATCAAGTCAGAAGAGGGCGAACCTCAGAAGAGATGGTATTGCGAAACTTGCCCACAAAGTTTTACGTCGGTAGATAGCTTAAAAGAGCACGAGATTAGGCACGATGCCGAAAAGCCATTTGTCTGTTTACTATGCCAGAAAGATTTCGTCTTAAAGTCTTCATTGGTTAGGCATATTACGTCACATCATAGTGTTGATCCTACCCCTCTCGTCGACAATGATAAGTGCCTAAAGACAGTTATTTCTCAAAATTGGAATAATCAAGTGGACATTAGCGTTTATGAGCAAAACGAAATAAAGGAACCACCAGAGCTCTCATCGTCATCCGAGATAAATTTAGAGAATGATGACAAAGATTATAAAAACAATCACGAGAATATGGAAATTGAAACAGTATTTGTATGTGAGACTTGTAAAAGAGATTTTAATGATCGAGCGTCATTATGGCTGCACATACGAGCGATGCATAAGGAATATGCTGCATTTACCTGTGGCGTGTGTTTAAAAGTATGCTTGGATAATACACAACTTCAAAATCATGTTTATATGTATCATAGAAGATCTAAGCTTTTAATATCGGAGCAAAGAAGATATAGTTGTACGATATGCGGTAGACAGCATGACTCGAGGAAAAAGCTAATCTCTCATGTCTCGATACACAACATCGATCCTGCCTATGATCCTGCAAATTTTGTACAATTAAATAGTAATTACTATAATGAGAACTTGAACGGTAATGAAGGAAACGAACAAGTATTAGAATTTGATGGAGAAGATGGCGAGAAAGTCGATTGTTACATTTGTTATAAATCTTTTCCTACTGAAGACCATCTTATACGACATCAGAGAAATGCTCACAAGTCTGACCAAATAGTTTCATTAGGAGATGCTGCAGGAAGTGCTTTGAATATCAATGGTAATGGCAATAGGACACAACATTTATTTTTCATTTGCGAAGTATGTGGTGGATCACATTCAAGTAAGTGGGAACGCTGGTTGCATATCAACAACGTGCATAACAACGAAACTTCTATTAAATGCGATCGGGAGAATTGTGGAAAGATATTTGCGACGAAAGCGTTGCGCAATGAACACAATCAGCATCACATGTTACAAGGTTCCTCACCAAATACTTGCGAGGTATGCGGAAAATTGTGGCCTACCCGCGTCGATTATTGGAAACATGTGATGGGCGTACACGCGGATACAGTGCCTCTGATCTGCGGCGTTTGTCTCAAAGTATTTTCCGACGTTGTGCAGTTAAGCGCTCACGTAAAGGCGAAACATTGGCCACTAACCGGTGGTGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAGATGTCTCGACATAGAAAGATCCATGGCTTGGAGGCGGTGATGGATACTACGATCGATAATAGCAGCTTCAATGAAACAACTAATGAGTCTGCTAAGCCTGATCACACTAATGGCGCTTCGGAGATAGAGTTAAGTTGCGAACAGTGCCCTGAGCTTAGTTTCACGACTTTAGATAGTTTGTGTAATCATCGACGGATAACGCACGGTCTTTTCCCGTGTGATTTGTGTAATAAATGTTACGGTAGAACGTCGCACCTATGGAAGCACGTGAATAGGGTACACAAAGGACACGCAGATGTGACTTGTCCTTACTGCGCAAAGACAAGTGCGTCGAGAGATCATTTGGCTGCACATATTGCTAAAATTCATAGGTTTATGCCAGTAATAGGCAAAGACAATCAGAATTGCATTGCTTCAAAATCTCTAAACGTGGAGGATGGTGTCTTACATTATTGCGAGAAGTGTAACAAAGGATTTCACAAGCGTTATCTGCTCCGTCGTCACATGAAAGGCTGTCAAAATTATCGCAAAGATCCCGGTGCATTATTAACCCGTTGTCGGGCTTGTGAAAGAATATTCAAGGATCGTGCAAGTTTGCAAAAACATATTGAGAATCATCACAGCACGTACACTTGCCATTTATGTAATGAAACGATTACCTCCAAGCTAGGTATCATGACACATAATCGCGTTAATCATATGGATCACCCGGATTTAACATGCGATCATCCGAGTTGTAAGAAGCTCTTTCGTACCAAAGAAGATTTGGAATCTCATCGAAAGGATCACAAATATCACAGCAATCCAAATGTTTGTGATTTTTGTGGTGACACTGTGGAAAATAAATTGAAACTGAAGATGCACGTGTTGTCGTTACATCGAAATGAGATTGGCGTGTCCTGCGGTGTCTGCCTTATTCCTATGAAGGATCCTAAAGATCTGAAAAAACACGTCGAGGCAGAGCACAGCAGTGTTCTTTCCAATCCAAACACGTGTCAAGTATGTGGAAAGCAATATGCATCCAAATGGAAGGCCTTTGATCACACGAAGAAATGTCATGGAAAAGTTTTCCTCACATGCAAACAATGTCTAGCAGTTTTTACGGATGAGAACAATATACGCGATCACTATGAACATGTGCATAACGTTCCGAAAGACCAATTGTCCATTTACGAATATAGGATGGACATTGGTCCGAAGAGAGAAGGTTATGAGACTCCCGATATCACTGTGAAGGAGGAACCGGATGATTTGGAATTTGACGAGGAAATGTGCGATGAGAGTTCAAACGACTCTCGCAAACGTAGAAGATCACCAAACGACACTTACGATTGTGAGATGTGTCCCGAAATTTTCCTCAATTCGGACACTCTCGCCAAGCATTATCAGAACGTCCACAACACTGACCCCATCCGTATGTTTAAGAAATTCAAAAAGGATAAGAGTGATAGTAAACGCAAGATTAGAAACAGAAACAACTTTGAATGCAAGAATTGCAAAAAGCAGTTCTCTACCAAGAGTTTGCTCTGGAATCACTTCAACATATGTACGCGACAAAATTCAATAGGTAGATTTGACATGCCGAATAACATTCCGTCAATTCTGGAGTCTCATTTGAAGAATAACAATCAAATTCAACGAGAAGAACCGCTACCACTAACAAACGAATCTAACTTAAATATTCCCGACTTCAATCTATTTGAGGACATCAACTTGCAATTGTCGGCCCAGAAACCCGTGCCGAATCTCATGCCATTGTCGCAGATAAAGATGTCGGGTAACGGCAAATGCTCGAGGAAAGATTCTCGCAAAGTGTATGATGAATCGACCAATACCGAATGTACGTGCGAAGTCTGTGGTAAACAATGGCCGGCCAAGAAACATTTATGGCAACATCTGATCCGTTTCCATCGCGCTGAAGCTGCTGTTACATGTGGTGTATGCTTAAAGTTGTGTAAATCTTATCAAGATCTTGCCGACCATTTGAAGGCCGAACATGCACCTGTATTGTCACCGGAGGGCAATAATTTTACTTGTAAAACATGCGGTAGATATCATAATGCGAGGAGCAAATTACTGTTGCATATGAGTATTCACATCGGAAACTTCCGGTGTCAAAAATGTCAGCAAGGTTTCACGAGTGAGGAGAAACTCGCCGAGCATGCGACGAGCTGTAGTGGAAAATCGGAATTTGAGGATCACGCAACGGCAGATGAAGATAACGCGAAAAACGACAACGACGAGAAAGGTAGTTTAATCGCTGACGAGACATCAGTTATCGGCGAGGCGGAAGAACCAGATTTTGAATCGGAAGGCGAAAGGAGCAGGGACATTCATGATGAAGATAATTCGGAAAATAGCGAAGAAGATAATTCGGAAAACAGCGACGATTCGGATAGTGATAGTAATAGTAGTTCGACGAGCGGTGATAGTGTTTCGTGTAATTCTGATAGTGACGACGAATCGGATATGGATGAAGCGGAAACGAACGCGACGGAGAAGAAAATATTACGACTGAGCGACATCAATAGATTCAGAATACATGATGGTATTCAAGAGAATATGCCTATGGAGAAGATTGCCGAGAATCAGAAAACTAATCTTATTTCTGTTACCACGGCAACCGTTGTAGAACAAACTTCCCAACATAATTTGAATAATCTTTTGATTCCCAGTGCCCCTACGAACATTGATAAATTTGAGGCATTGCATCTCGAGGAATCCACTAAAGCTGCGATAAGCGATGTAGATTTGTCTGATGATAATGATGACGATGGTGACAACGAGGAAGATGATGAAAATAATGAAAATGAAGAAGAGGATGAAGGTGAAGATGAAAGTGAAGCGGAAAGTGAAAATGAGGAAAATGAATCTGAGGAGCACAGCAGTACAACGGATCGTACGAGGCACAAGCTTAGTCCGATGGTTCCGCTAAATATAGCTAAAGGCCTGGAGGAATGTGAGATAACCGAGATACCAAATGATGCTGAGAATGTATCAAATCCGACTAATTTCTTCGCTGCTAACAACAATGATCTATCCGTAACGTGGGACGAAAACTTGGATGATAACGAACTTGACAATGACGATAGCAATTCCAATATTGGAGATAGGGATGTGGAAAAAAATGAAGAATTCAATAAAGAATGCGACAAAATGGAAGTGAACGAAGATGATGACTTTGAAGAGGATTCTGCAGATGAAAACCTAGTAGACAATGATAGAGAGGGTAATGGAGACGATCAGATGCATGAGGTGCATAATTTGGACGGGACTGTGTTAATGGTGGCTAATGACGCGGAAGGTAATCAGATTTTGATAGAACAAAATGTGTTAGACATTGATAACGAGGACTCTAATGTCGAAGCGGCACAGTATATTTACCCAGAAAACGCGTACGAAATCGAAGAGGAAGAAGAGGAGGATTACGTGACGCAAAATGAAACCGACATCATGCAGACGGATGAAATGCAAGGTGGTATGTCATACGTTCAAGATACGTCGGAAAATGAGGATAGTGCGGAGAGTGATATCGAGGAAAACAGTGATGTGCAGAAGTAA
- Protein Sequence
- MHIFGQEGRNRQLVDKIQTCLPFKIVEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGTSNDGANDNAQSSEIHAEFKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEATMIDDYEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECGANNTSATTTQDAVIFPHTSQQHEVYVCSLCHKAFSSKGHLSLHARIHGGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPPSCTETRYQCQTCPLVYMDLADFNAHRQICIQEQRTDLLGQTEGQNKIFADTSDISSVDSDDENKDFRNAEAKLAKNPQLTILKQALTKGDSLKRNYDDDDSTSNSKPKKIIKSEEGEPQKRWYCETCPQSFTSVDSLKEHEIRHDAEKPFVCLLCQKDFVLKSSLVRHITSHHSVDPTPLVDNDKCLKTVISQNWNNQVDISVYEQNEIKEPPELSSSSEINLENDDKDYKNNHENMEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKVCLDNTQLQNHVYMYHRRSKLLISEQRRYSCTICGRQHDSRKKLISHVSIHNIDPAYDPANFVQLNSNYYNENLNGNEGNEQVLEFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIVSLGDAAGSALNINGNGNRTQHLFFICEVCGGSHSSKWERWLHINNVHNNETSIKCDRENCGKIFATKALRNEHNQHHMLQGSSPNTCEVCGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVVQLSAHVKAKHWPLTGGDFCCDICGRPYSNKSKMSRHRKIHGLEAVMDTTIDNSSFNETTNESAKPDHTNGASEIELSCEQCPELSFTTLDSLCNHRRITHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRFMPVIGKDNQNCIASKSLNVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENNIRDHYEHVHNVPKDQLSIYEYRMDIGPKREGYETPDITVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPIRMFKKFKKDKSDSKRKIRNRNNFECKNCKKQFSTKSLLWNHFNICTRQNSIGRFDMPNNIPSILESHLKNNNQIQREEPLPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQIKMSGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFTSEEKLAEHATSCSGKSEFEDHATADEDNAKNDNDEKGSLIADETSVIGEAEEPDFESEGERSRDIHDEDNSENSEEDNSENSDDSDSDSNSSSTSGDSVSCNSDSDDESDMDEAETNATEKKILRLSDINRFRIHDGIQENMPMEKIAENQKTNLISVTTATVVEQTSQHNLNNLLIPSAPTNIDKFEALHLEESTKAAISDVDLSDDNDDDGDNEEDDENNENEEEDEGEDESEAESENEENESEEHSSTTDRTRHKLSPMVPLNIAKGLEECEITEIPNDAENVSNPTNFFAANNNDLSVTWDENLDDNELDNDDSNSNIGDRDVEKNEEFNKECDKMEVNEDDDFEEDSADENLVDNDREGNGDDQMHEVHNLDGTVLMVANDAEGNQILIEQNVLDIDNEDSNVEAAQYIYPENAYEIEEEEEEDYVTQNETDIMQTDEMQGGMSYVQDTSENEDSAESDIEENSDVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01355612;
- 90% Identity
- iTF_01228519;
- 80% Identity
- -