Pbar007143.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex barbatus
Gene Symbol
-
Assembly
GCA_000187915.1
Location
NW:106544-123292[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 1.3e-05 0.00093 18.8 2.5 1 23 289 311 289 311 0.98
2 32 0.0072 0.5 10.2 3.7 1 23 334 357 334 357 0.96
3 32 0.00049 0.034 13.9 0.5 2 23 364 386 363 386 0.96
4 32 0.03 2.1 8.3 0.0 1 21 406 426 406 427 0.95
5 32 0.00031 0.022 14.5 0.1 2 23 522 543 521 543 0.95
6 32 0.00048 0.033 13.9 1.4 1 23 549 571 549 572 0.95
7 32 0.00015 0.01 15.5 0.2 1 23 642 665 642 665 0.96
8 32 0.32 22 5.0 1.4 1 23 671 694 671 694 0.95
9 32 0.1 7.1 6.6 1.4 1 23 707 729 707 729 0.97
10 32 2.7e-05 0.0019 17.8 0.9 3 23 774 795 773 795 0.96
11 32 5.2 3.6e+02 1.2 0.2 1 23 825 848 825 848 0.90
12 32 0.12 8.6 6.3 1.1 2 23 855 878 854 878 0.91
13 32 1.3 90 3.1 0.0 2 23 887 909 887 909 0.90
14 32 0.015 1 9.2 0.0 2 23 916 938 915 938 0.93
15 32 7.1e-05 0.005 16.5 3.2 1 23 946 968 946 968 0.97
16 32 0.021 1.4 8.8 1.3 2 23 1005 1028 1004 1028 0.94
17 32 0.00017 0.012 15.4 3.3 1 23 1031 1054 1031 1054 0.97
18 32 0.00055 0.038 13.7 0.1 2 23 1061 1083 1060 1083 0.95
19 32 0.00073 0.051 13.3 3.9 1 21 1110 1130 1110 1131 0.95
20 32 0.0022 0.15 11.9 1.8 2 23 1145 1166 1144 1167 0.93
21 32 0.29 20 5.2 1.1 1 23 1170 1193 1170 1193 0.94
22 32 0.0075 0.52 10.2 0.7 2 23 1200 1223 1199 1223 0.90
23 32 2.4 1.7e+02 2.3 0.2 2 23 1231 1253 1231 1253 0.94
24 32 2.6 1.8e+02 2.2 0.0 2 23 1260 1282 1259 1282 0.88
25 32 0.18 13 5.8 2.7 2 23 1291 1313 1291 1313 0.96
26 32 0.23 16 5.5 0.6 2 23 1319 1341 1318 1341 0.92
27 32 0.013 0.93 9.4 0.1 1 23 1403 1426 1403 1426 0.95
28 32 7.1e-05 0.005 16.5 1.3 1 21 1454 1474 1454 1475 0.93
29 32 0.26 18 5.3 1.9 2 23 1575 1597 1574 1597 0.94
30 32 0.73 51 3.9 0.4 2 23 1604 1626 1603 1626 0.94
31 32 0.55 39 4.3 2.5 1 23 1637 1659 1637 1659 0.97
32 32 0.039 2.7 7.9 0.1 1 19 1663 1681 1663 1684 0.93

Sequence Information

Coding Sequence
ATGGCGACGATATCGACGActacgacaacgacaacgacgtcgacgtcgataTCGGCATCGACATCGACATCGACATCGACATCGACATCGACATTAGCATTAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCAAATCAAAGCGCGATAACGATGGCGATAGAACCGAGAAAATCTTATCACGAGCTCTGTCGCCTGTGCGCTTCCTACGACGCCGTTAGGATGCACATATTCGGCCAGGAAGGCAGGAACCGTCAGCTTGTCGACAAGATCCAGACATGTTTGCCGTTCAAGATAGTGGAAGATGATCGTTTGCCAAAAGTTCTGTGTTATCGATGCATgtataatttggaaaatttttatgactttaGAACTGCGTGTGTCAACGCAGCTGCTTGGTTGGAAAGAAATAGGCCGAAGGAAGGTACGAGTAATGACGGAGCAAATGACAACGCACAATCTAGTGAGATTCACGCAGAGTttaaaggaaaggaaaacaTGCCAGTACTTATTCCAGAGGCACCCGTAGTCAATCCAAATGCGGCATTAGGTACACCACCGAGATTAAATTCGGATGGTGAAGCAGATCCCGAGATTGAAGAAATTCTCGATGCAAGTGAAGGTACGGACGAAGctACGATGATTGATGATTACGAAGATCGACGATCAGAATATGAGATGGCATATGAGATGGACATGGAGACGAATCCTAGcgattttttagaaatgactCCGATGGTAACCGAGGAAAATGAAGAGGATTGCGGTGCGAATAACACGAGTGCAACGACGACTCAAGATGCTGTGATTTTTCCACATACATCACAGCAACACGAAGTCTATGTCTGTTCTCTATGCCATAAAGCATTTAGTTCAAAAGGTCACTTATCGCTACATGCAAGGATTCACGGAGGTGAGGGTGACGTGATCGGCGAGAGAGTAATTACTGACGATCACACTTCGTATCAACGACCGTATCAATGTGATCTTTGTCATAAATCATATTCTACTGCGAAGCACCGCTGGGGACATGTTTCTACGACACATCGAGGACATCCTGCGGTAACGTGTGCGTACTGTTCTCGTATATACTCGACACGATATAACCTCGACGAACATATAAAATCGCGACATGCTGGTTTACCGCCACCTCCAGAATTATCGGTTCCTCCTTCTTGCACGGAAACTCGTTATCAATGCCAAACGTGTCCGTTGGTATATATGGATCTGGCAGATTTCAACGCACATCGTCAGATATGTATCCAAGAGCAACGTACAGATTTATTGGGGCAAACTGAAGGACAGAATAAGATTTTTGCCGACACGTCCGATATTTCGAGTGTAGATTCGGACGATGAGAACAAAGACTTTAGGAATGCTGAGGCTAAATTGGCTAAAAATCCGCAGCTAACTATATTAAAACAAGCGCTAACTAAAGGAGATAGTTTAAAAAGGAattatgacgatgatgatTCGACATCTAATAGCAaaccgaaaaaaataatcaagtcagaagagGGCGAACCTCAGAAGAGATGGTATTGCGAAATTTGCCCACAAAGTTTTACGTCGGTAGATAGCTTAAAAGAGCACGAGATTAGGCACGATGCCGAAAAGCCATTTGTCTGTTTACTATGCCAGAAAGATTTTGTCTTAAAGTCTTCATTGGTTAGGCATATTACGTCACATCATAGTGTTGATCCTACCCCTCTCGTCGACAATGATAAGTGCCTAAAGacaattatttctcaaaattggAATAATCAAGTGGACATTAGCGTTTATGAGCAAAACGAAATAAAGGAACCACCAGAGCTCTCATCGTCATCCgagataaatttagagAATGATgacaaagattataaaaacaatcacgAGAATATGGAAATTGAAACGGTATTTGTATGTGAGACTtgtaaaagagattttaatgATCGAGCGTCATTATGGTTGCACATACGAGCGATGCATAAGGAATATGCTGCATTTACCTGTGGCGTGTGTTTAAAAGTGTGCTTGGATAATACACAACTTCAAAATCATGTTTATATGTATCATAGAAGATCTAAGCTTTTAATATCGGAGCAAAGAAGATATAGTTGTACGATATGCGGTAGACAGCATGACTCGAGGAAAAAGCTAATCTCTCATGTCTCGATACACAACATCGATCCTGCCTATGATCCTGcaaattttgtacaattaaatagtaattacTATAATGAGAACTTGAATGGTAACGAAGGAAACGAACAAGTATTAGAATTTGATGGAGAAGATGGTGAGAAAGTCGATTGttacatttgttataaatcttttccTACTGAAGACCATCTTATACGACATCAGAGAAATGCTCACAAGTCTGACCAAATAGTTTCATTAGGAGATGCTGCAGGAAGTGCTTTGAATATCAATGGTAATGGCAACAGGAcacaacatttatttttcatttgcgaAGTATGTGGTGGATCACATTCAAGTAAGTGGGAACGCTGGTTGCATATCAACAACGTGCATAACAACGAAACTTCTATTAAATGCGATCGGGAGAATTGTGGAAAGATATTTGCGACGAAAGCGTTGCGCAATGAACACAATCAGCATCACATGTTACAAGGTTCCTCACCAAATACTTGCGAGGTATGCGGAAAATTGTGGCCTACCCGCGTCGATTATTGGAAACATGTGATGGGCGTACACGCGGATACAGTGCCTCTGATCTGCGGCGTTTGTCTCAAAGTATTTTCCGATGTTGTGCAGTTAAGCGCTCACGTAAAAGCGAAACATTGGCCACTAACCGGTGGTGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAGATGTCTCGACATAGAAAGATCCATGGCTTGGAGGCGGTGATGGATACTACGATCGATAATAGCAGCTTCAATGAAACAACTAATGAGTCTGCTAAGCCTGATCACACTAATGGCGCTTCGGAGATAGAGTTAAGTTGCGAACAGTGCCCTGAGCTTAGTTTCACGACTTTAGATAGTTTGTGTAATCATCGACGGATAACGCACGGTCTTTTCCCGTGTGAtttgtgtaataaatgttACGGTAGAACGTCGCATCTATGGAAACACGTGAATAGGGTACACAAAGGACACGCAGATGTGACTTGTCCTTACTGCGCAAAGACAAGTGCGTCGAGAGATCATTTGGCTGCACATATTGCTAAAATTCATAGGTTTATGCCAGTAATAGGCAAAGACAATCAGAATTGCATTGCTTCAAAATCTCTAAATATGGAGGATGGTGTCTTACATTATTGCGAGAAGTGTAACAAAGGATTTCACAAGCGTTATCTGCTCCGTCGTCACATGAAAGGCTGTCAAAATTATCGCAAAGATCCCGGTGCATTATTAACCCGTTGTCGGGCTTGTGAAAGAATATTCAAGGATCGTGCAAGTTTACAAAAACATATTGAGAATCATCACAGCACGTACACTTGCCATTTATGTAATGAAACGATTACCTCCAAGCTAGGTATCATGACACATAATCGCGTTAATCATATGGATCACCCGGATTTAACATGCGATCTTCCGAGTTGTAAGAAGCTCTTTCGTACCAAAGAAGATTTGGAATCTCATCGAAAGGATCACAAATATCACAGCAATCCAAATGTTTGTGATTTTTGTGGTGACACTgtggaaaataaattgaaactgAAGATGCACGTGTTATCGTTACATCGAAATGAGATTGGCGTGTCCTGCGGTGTCTGCCTTATTCCTATGAAGGATCCTAAAGATCTAAAAAAACACGTCGAGGCAGAGCACAGCAGTGTTCTTTCCAATCCAAACACGTGTCAAGTATGTGGAAAGCAATATGCATCCAAATGGAAGGCCTTTGATCACACGAAGAAATGTCATGGAAAAGTTTTCCTCACATGCAAACAATGTCTAGCAGTTTTTACGGATGAGAACAATATACGCGATCACTATGAACATGTGCATAACGTTCCGAAAGACCAATTGTCCATTTATGAATATAGGATGGACATTGGTCCGAAGAGAGAAGGTTATGAGACTCCCGATATCACTGTGAAGGAGGAACCGGATGATTTGGAATTTGATGAGGAAATGTGCGATGAGAGTTCAAATGACTCTCGCAAACGTAGAAGATCACCAAACGACACTTACGATTGTGAGATGTGTCCCGAAATTTTCCTCAATTCGGACACTCTCGCCAAGCATTATCAGAACGTCCACAACACTGACCCCATCCGTATGTTTAAGAAATTCAAAAAGGATAAGAGTGATAGTAAACGCAAGATTAGAAACAGAAACAACTTTGAATGCAAGAATTGCAAAAAGCAGTTCTCTACCAAGAGTTTGCTCTGGAATCACTTCAACATATGTACGCGACAAAATTCAATAGGTAGATTTGACATGCCGAATAACATTCCGTCAATTCTGGAGTCTCatttgaagaataataatcaaattcaacGAGAAGAACCGCTACCACTGACAAACGAATCTAACTTAAATATTCCCGACTTCAATCTATTTGAGGACATCAATTTGCAATTGTCGGCCCAGAAACCCGTGCCGAATCTCATGCCATTGTCGCAGATAAAGATGTCGGGTAACGGCAAATGTTCGAGGAAAGATTCTCGCAAAGTGTATGATGAATCGACCAATACCGAGTGTACGTGCGAAGTCTGTGGTAAACAATGGCCGGCCAAGAAACATTTATGGCAACATCTGATCCGTTTTCATCGCGCTGAAGCTGCTGTTACATGTGGTGTATGCTTAAAGTTGTGTAAATCTTATCAAGATCTTGCCGACCATTTGAAGGCCGAACATGCACCTGTATTGTCACCGGAGGGCAATAATTTTACTTGTAAAACATGCGGTAGATATCATAATGCGAGGAGCAAATTACTGTTGCATATGAGTATTCACATCGGAAACTTCCGGTGTCAAAAATGTCAGCAAGGTTTCGCGAGTGAGGAGAAACTCGCCGAGCATGCGACGAGCTGTAGTGGAAAATCGGAATTTGAGGATCACGCAACGGCAGATGAAGATAACGCGAAAAACGACAACGACGAGAAAGGTAGTTTAATCGCTGATGAGACATCAGTTATCGGCGAGGCAGAGGAACCAGATTTTGAATCGGAAGGCGAAAGGAGCAGGGACATTCATGATGAAGATAATTCGGAAAATAGCGAAGAAGATAATTCGGAAAACAGCGACGATTCGGATAGTGATAGTAATAGCAGTTCGAGTgaagatgaaaatgaaaacgaggaaggaggagaagaggaagaggaagaggaagaagagaacgAAAATGAGAACGAAAATGAGAACGACAATGAGAATGACAATGACAATGACAATGACAATGACAATGACAATGACAATGACAATGACAATGAAAATGAATCTGATACGAGAACTACTAGTAGAGCGAGCGGTGATAGTGTTTCGTGTAATTCTGATAGTGACGACGAATCGGATATGGATGAAACGGAAACGAACGCGAcggagaagaaaatattacgaCTGAGCGACATCAATAGATTCAGAATACATGATGGTATTCAAGAGAATATGCCTATGGAGAAGATTGCCGAGAATCAGAAAACTAATCTTATTTCTGTTACCACGGCAACCGTTGTAGAACAAACTTCCCaacataatttgaataatcttTTGATTCCCAGTGCCCCTACGaacattgataaatttgaGGCATTGCATCTCGAGGAATCCACTAAAGCTGCGATAAGCGATGTAGATTTGtctgatgataatgatgacgaTGGTGACAACGAGGAagatgatgaaaataatgaaaatgaagaagaggATGAAGGTGAAGATGAAAGTGAAGCGGAAAGTGAAAATGAGGGTGAGGGTGAAGCTGccgaagaagaggaagaagaagaggaagaggaagaagcagatgaagaagatgaaggagatgaagatgaagatgatgatGACGCCAATAATGACGCCAATAATGACGTCAATGAAGATGACGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAATGAATCTGAGGAGCACAGCAGTACAACGGATCGTACGAGGCACAAGCTTAGTCCGATGGTTCCGCTAAATATAGCTAAAGGCCTGGAGGAATGTGAGATAACCGAAATGATACCAAATGATGCTGAGAATGTATCAAATCCGACTAATTTCTTCTCTGCTAACAACAATGATCTACCCGTAACGTGGGACGAAAACTTGGATGATAACGAACTTGACAATGACGATAGCAATTCCAATATTGGAGATAGGGAtgtggaaaaaaatgaagaattcaATAAAGAATGCGACAAAATGGAAATGAACGAAGATGATGACTTCGAAGAGGATTCTACAGATGAAAACCTAGTAGACAATGATAGAGAGGGTAATGGAGACGATCACATGCATGAGATGCATAATTTGGACGGGACTGTGTTAATGGTGGCTAATGACGCGGAAGGTAATCAGATTTTGATAGAACAAAATGTGTTAGACATTGATAACGAAGACTCTAATGCCGAAGCGGCACAGTATATTTACCCAGAAAACACGTACGAAAtcgaagaggaagaagaggaggattACGTGACGCAAAATGAAACCGACATCATGCAGACGGATGAAATGCAAAGTGGTATGTCATACGTTCAAGATACGTCGGAAAATGAGGATAGTGCGGAGAGTGATATCGAGGAAAACAGTGATGTGCAGAAGTAA
Protein Sequence
MATISTTTTTTTTSTSISASTSTSTSTSTSTLALASASASASASASASASASANQSAITMAIEPRKSYHELCRLCASYDAVRMHIFGQEGRNRQLVDKIQTCLPFKIVEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGTSNDGANDNAQSSEIHAEFKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEATMIDDYEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEDCGANNTSATTTQDAVIFPHTSQQHEVYVCSLCHKAFSSKGHLSLHARIHGGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPPSCTETRYQCQTCPLVYMDLADFNAHRQICIQEQRTDLLGQTEGQNKIFADTSDISSVDSDDENKDFRNAEAKLAKNPQLTILKQALTKGDSLKRNYDDDDSTSNSKPKKIIKSEEGEPQKRWYCEICPQSFTSVDSLKEHEIRHDAEKPFVCLLCQKDFVLKSSLVRHITSHHSVDPTPLVDNDKCLKTIISQNWNNQVDISVYEQNEIKEPPELSSSSEINLENDDKDYKNNHENMEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKVCLDNTQLQNHVYMYHRRSKLLISEQRRYSCTICGRQHDSRKKLISHVSIHNIDPAYDPANFVQLNSNYYNENLNGNEGNEQVLEFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIVSLGDAAGSALNINGNGNRTQHLFFICEVCGGSHSSKWERWLHINNVHNNETSIKCDRENCGKIFATKALRNEHNQHHMLQGSSPNTCEVCGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVVQLSAHVKAKHWPLTGGDFCCDICGRPYSNKSKMSRHRKIHGLEAVMDTTIDNSSFNETTNESAKPDHTNGASEIELSCEQCPELSFTTLDSLCNHRRITHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRFMPVIGKDNQNCIASKSLNMEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDLPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENNIRDHYEHVHNVPKDQLSIYEYRMDIGPKREGYETPDITVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPIRMFKKFKKDKSDSKRKIRNRNNFECKNCKKQFSTKSLLWNHFNICTRQNSIGRFDMPNNIPSILESHLKNNNQIQREEPLPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQIKMSGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLAEHATSCSGKSEFEDHATADEDNAKNDNDEKGSLIADETSVIGEAEEPDFESEGERSRDIHDEDNSENSEEDNSENSDDSDSDSNSSSSEDENENEEGGEEEEEEEEENENENENENDNENDNDNDNDNDNDNDNDNDNENESDTRTTSRASGDSVSCNSDSDDESDMDETETNATEKKILRLSDINRFRIHDGIQENMPMEKIAENQKTNLISVTTATVVEQTSQHNLNNLLIPSAPTNIDKFEALHLEESTKAAISDVDLSDDNDDDGDNEEDDENNENEEEDEGEDESEAESENEGEGEAAEEEEEEEEEEEADEEDEGDEDEDDDDANNDANNDVNEDDDDGPPVLSPIMPLLPENESEEHSSTTDRTRHKLSPMVPLNIAKGLEECEITEMIPNDAENVSNPTNFFSANNNDLPVTWDENLDDNELDNDDSNSNIGDRDVEKNEEFNKECDKMEMNEDDDFEEDSTDENLVDNDREGNGDDHMHEMHNLDGTVLMVANDAEGNQILIEQNVLDIDNEDSNAEAAQYIYPENTYEIEEEEEEDYVTQNETDIMQTDEMQSGMSYVQDTSENEDSAESDIEENSDVQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_01229189;
80% Identity
-