Pcal011371.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- -
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004252.1:32512-35321[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00012 0.018 16.4 4.5 2 23 246 267 245 267 0.97 2 15 0.00092 0.14 13.6 5.6 1 23 273 296 273 296 0.96 3 15 3e-06 0.00045 21.4 1.5 2 23 384 405 383 405 0.97 4 15 7.5e-06 0.0011 20.2 3.7 1 23 411 433 411 434 0.96 5 15 5.9e-05 0.0088 17.3 1.1 1 23 439 461 439 461 0.98 6 15 8.8e-07 0.00013 23.1 1.4 1 23 479 501 479 501 0.98 7 15 1e-06 0.00015 22.9 1.2 1 23 507 529 507 529 0.97 8 15 3.6e-05 0.0054 18.0 2.1 1 23 535 557 535 557 0.98 9 15 0.0011 0.17 13.3 0.2 1 23 563 585 563 585 0.99 10 15 1.2e-05 0.0018 19.5 1.1 1 23 591 614 591 614 0.94 11 15 1.6e-05 0.0024 19.1 1.3 1 23 620 642 620 642 0.98 12 15 0.00035 0.053 14.9 4.7 1 23 648 670 648 670 0.98 13 15 4.5e-06 0.00067 20.9 0.4 1 23 676 699 676 699 0.97 14 15 3.2e-06 0.00048 21.3 0.9 1 23 705 727 705 727 0.96 15 15 7.8e-07 0.00012 23.3 4.8 1 23 733 755 733 755 0.99
Sequence Information
- Coding Sequence
- ATGACAAAAATAAGAAATGCTATAAGTATGGAGTGGATAGCACAAAATGCATATATAAACAATTCTTTGGATCACTTGCTGCCAGGAAATAAAAGTCAAGACTTCTTAATAAAGCAAGAAGCAAAGTTCTTCCAAAGCGCTTTGAATTCTCAGTCAGGACAAAATGGAATTGTACATATGCAAGTCACACCTAAAGAGAAGGACAAGGAAATCAAGCAGGAAAGCAGCTGTCGAGATATATTGATAACACCTTGTCAAACGAGCTATAGGGATTTTAAGAGCGCGCTCGAATCCTGGATGAGAAAGAATCCAACCAAAGCCTGGTGTGAAGGACTAAACTTTATACAGATTGTTCACAATTCAACATATCACTGTCAAAATGGTAAAGTTCCATATGACGTGTTGTTCAGACAAAATGTACGCGAAAATTTTCAAAGCATGGAGAAAGACATGGAGAATCTGTGGACGGAAGAAGAATGGCTCAAATGTTTGTCAGACAGAAAAATCGCGGCCGCAGCAACGGCAGATACGCAGTGTACATCAAATTCCAATCAATATGAAGAAAATGCACAAGATGCACAGAACCAAAATGCACCTTCGAAAGTCGATATAAATGTCTTCAGTTGCGTCAAGGCGAGGAATGAATCTTTCACAGACAATGCGCGCACAGTAGATCATACAGATGAACTAAACGTGAAAAATGAATCGAAAGTCCATGAAGATACTCAATCTCTCAAGTGCAAATATTGTCAAAAGCAATATATGAAGATAGGACATTTGAAGAACCATATGAGAACTCATGAGACAAAACGGCTCTTCCATTGTAAGCTGTGCAAAAAGACATTTAGCGTTCTAAGATTATACACAAAGCATATGAAACAGTCGCATGAACAAGATAAATCAATCGAGGAAAGTGAAATTCCGGTTAGTAGAAATACGAGAAACAATACTGGCACGATAGCGACTATATCTAATAAGGAAAAATCAATGAGTCAAACGACACACGAGACATCCGACCCTGAGGCGAATGAAGATTGCGATTCATTAATAAATACAAAAGATTCCTGCGGCAAGACCGGCAAGAACTCCAATCAAGTTGGTAAACGAAAGCTGTCCACGGAGAATCGCGGGTCGAAGATACAATCCTTACAATGTACATATTGCAAGCAGAAATTTAGTTTTCCAAGCGTGCTGGAGAGGCACATGCGATCGCACACAAACGAACGGCCGTACGTGTGCGAGATATGTAATAAGAGCTTCAAACAACTGGGTCATCTCAGCCAACACTCGTTGACCCATCATGACTATCGCTCGTTTCAATGTACAGTATGCGGTGTGAAGTTCGACTCGTTGGATTTACTAAAACAGCATGCACACACGCATAAGGGTGACGTGACAACGACCACGTCCAAAATTCGCGATGTCTACCGTTTGTTTGAATGCGACAATTGTAAGAAGGTGTTTACGACGAAAAGCGTGCTGGAACGCCATATATTCACGCATACGCAGGAACGTCAGTATGACTGTAAGGTATGTGGTAAGCGATTCAAGCAGGCTGGTCACGTTAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACTGTGTGCTTGAAACGTTTCAGTCTGTCAAATTCGCTGAAAAAACATATGTACGTGCACAACGGTGAGAAGCCGTATCAATGCGACGTATGCGGCGCGCGCTTCCTCGAGAAGCGCAATTTGAACGGTCATTTATTGACACATACTAATGAGCGCCCATACTGCTGCAAGATCTGTGGCAAACGGTATACTCTGGCTGATACTCTGCGCCGTCACATCAGTGCCGCGCATGAGGATGGTCGTACATATCAATGCGAGATCTGCGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAGAAAGTGCACAACGACGAACGACCGTTTCAGTGTCATCTATGCGAAAAGAACTTCAAACATAAAAATGTGCTCAAATCACACTTGGCGATCCACGCGAATGTACGGCCGTTCGAGTGCGATGTGTGCAAAGCGACGTTCGTTAGGAAGACGAATCTGCAGACGCACATCTCATCCGCTCATATGAACGAGCGACCGTATACCTGTACAATTTGTGGCAAGCGTTTCAAGCAGATTAGCCATTTAAATGGTCATGTAGTCGTCCACAGTAACCTGATGCCATATAAGTGTGATTACTGCGATCGCCGATGCAATCGACTCGACAATCTGAAGAAGCATATGCGTCTTCATACAAAGAACAAGGAATGA
- Protein Sequence
- MTKIRNAISMEWIAQNAYINNSLDHLLPGNKSQDFLIKQEAKFFQSALNSQSGQNGIVHMQVTPKEKDKEIKQESSCRDILITPCQTSYRDFKSALESWMRKNPTKAWCEGLNFIQIVHNSTYHCQNGKVPYDVLFRQNVRENFQSMEKDMENLWTEEEWLKCLSDRKIAAAATADTQCTSNSNQYEENAQDAQNQNAPSKVDINVFSCVKARNESFTDNARTVDHTDELNVKNESKVHEDTQSLKCKYCQKQYMKIGHLKNHMRTHETKRLFHCKLCKKTFSVLRLYTKHMKQSHEQDKSIEESEIPVSRNTRNNTGTIATISNKEKSMSQTTHETSDPEANEDCDSLINTKDSCGKTGKNSNQVGKRKLSTENRGSKIQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEICNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHTHKGDVTTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCLKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228515;
- 90% Identity
- -
- 80% Identity
- -