Pbar003745.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex barbatus
Gene Symbol
-
Assembly
GCA_000187915.1
Location
NW:926838-931051[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 9.4e-05 0.0066 16.1 4.5 2 23 361 382 360 382 0.97
2 15 0.00071 0.05 13.4 5.6 1 23 388 411 388 411 0.96
3 15 2.4e-06 0.00016 21.2 1.5 2 23 498 519 497 519 0.97
4 15 5.8e-06 0.00041 19.9 3.7 1 23 525 547 525 548 0.96
5 15 4.6e-05 0.0032 17.1 1.1 1 23 553 575 553 575 0.98
6 15 6.8e-07 4.8e-05 22.9 1.4 1 23 593 615 593 615 0.98
7 15 7.9e-07 5.5e-05 22.7 1.2 1 23 621 643 621 643 0.97
8 15 2.8e-05 0.0019 17.8 2.1 1 23 649 671 649 671 0.98
9 15 0.00089 0.062 13.1 0.2 1 23 677 699 677 699 0.99
10 15 9.3e-06 0.00064 19.3 1.1 1 23 705 728 705 728 0.94
11 15 1.3e-05 0.00087 18.9 1.3 1 23 734 756 734 756 0.98
12 15 0.00027 0.019 14.7 4.7 1 23 762 784 762 784 0.98
13 15 3.5e-06 0.00024 20.7 0.4 1 23 790 813 790 813 0.97
14 15 2.5e-06 0.00017 21.1 0.9 1 23 819 841 819 841 0.96
15 15 6e-07 4.2e-05 23.1 4.8 1 23 847 869 847 869 0.99

Sequence Information

Coding Sequence
atgacaaaaataagaaatgccATAAGTATGGAGTGGATAGCacaaaatgcatatataaacaattctttGGATCACTTGCTGCCAGGAAATAAAAGTCAAGACTTCTTAATAAAGCAAGAAGCAAAGTTCTTCCAAAGCGCTTTGAATTCTCAGTCAGGACAAAATGGAATTGTACATATGCAAGTCACACCTAAAGAGAAGGACAAGGAAATCAAGCAGGAAAGCAGTTGTCGAGATATATTGATAACAccTTGTCAAACGAGGTCTGTAAATCAATTGCCCAAAGGATTAATTAACATCTCAgagaaattgtataataaggGTCGCATTGATATAATAGAGATGACAGTAGATTCTatgttcaattataaatattttctcgtttaTGAAGATcaattttccaaatttgtTATACTAAAACCGCTCCATAGCAATGCAGCCAGAGAGGTCGCGGTGAATCTGCTAGATATATTGGCGATCATAGGAGCACCGCGAGTATTACAGAGTGGCAATGGACGTAAGTTTGCTGAACAAGTTGTATGTGAACTACGTTTGCTGTGGAACGATTTATTTCTACTGCACGGGGACGTGTCTAAATGTGAAGTTAGCTATAGGGATTTTAAGAGCGCGCTCGAATCCTGGATGAAAAAGAATCCAACCAAAGCCTGGTGTGAAGGACTAAACTTTATACAGATTGTTCACAATTCGACATATCGCTGTCAGAATGATAAAGTTCCATATGACGTGTTGTTCAGACAAAATGTAcgcgaaaattttcaaagcatGGAGAAAGACACGGAGAATCTGTGGACGGAAGAAGAATGGCTCAAATATTTGTCAGACAGAAAAATCGCGGCCGCAGCAATAGCAGATACGCAGTGTACATCAAATTCCAATCAATATGAAGAAAACGCACAAGATACACAGAACCAAAATGCACCTTCGAAAGTCGATATAAATGTCTTCAATTGCGTCAAAGCGAGGAATGAATCTCTCACAGACAATGCGCACACAGTAGTTCATACAGATGAACTAAACGTGAAAAATGAATCGAAAGTACATGAAGATACTCAATCTCTCAAGTGCAAATACTGTCAAAAGCAATATATGAAGATAGGACATTTGAAGAACCATATGAGAACTCATGAGACAAAACGGCTCTTCCATTGTAAACTGTGTAAAAAGACATTTAGCGTTCTAAGATTATACACAAAGCATATGAAACAGTCGCATGAACAAGATAAATCAATCGAGGAAAGTGAAATTCCGGTTAGTAGAAATACGAGAAACAATACTGGCACGATAGCGGCTGTATCTAAGGAAAAATCAATGAGTCAAACGACACACGAGACATCCGACTTTGAGGCGAATGAAGATTgcgattcattaataaatacaaaagattCCTGCGGCAAGACCGGCAAGAACTCCAATCAAGTTGGTAAACGAAAGCTATCCACGGAGAATCGCGGGTCGAAGATACAATCCTTACAATGTACATATTGCAAGCAGAAATTTAGTTTTCCAAGCGTGCTGGAGAGGCACATGCGATCGCACACAAACGAACGGCCGTACGTGTGCGAGATATGCAATAAGAGCTTCAAACAGCTGGGTCATCTCAGCCAACACTCGTTGACCCATCATGACTATCGCTCGTTTCAATGTACAGTATGCGGTGTAAAGTTCGACTCGTTGGATTTACTAAAACAGCATGCACACACGCATAAGGGTGACGTGACAACGACCACGTCCAAAATTCGCGATGTCTACCGTTTGTTTGAATGCGACAATTGCAAGAAGGTGTTTACGACGAAAAGCGTGCTGGAACGCCATATATTCACGCATACGCAGGAACGTCAGTATGACTGTAAGGTATGTGGTAAGCGATTCAAGCAGGCTGGTCACGTTAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACTGTATGCTTGAAACGCTTCAGTCTGTCAAATTCGCTGAAAAAACATATGTACGTGCACAACGGTGAGAAGCCGTATCAATGCGACGTATGCGGCGCGCGCTTCCTCGAGAAGCGCAATTTGAACGGTCATTTATTGACACATACTAATGAGCGTCCATACTGCTGCAAGATCTGTGGCAAACGGTATACTCTGGCTGATACTCTGCGCCGTCACATCAGTGCCGCGCATGAGGATGGTCGTACATATCAATGCGAGATTTGCGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAGAAAGTGCACAACGACGAACGACCGTTTCAGTGTCATCTATGCGAAAAGAACttcaaacataaaaatgtGCTCAAATCACACTTGGCGATCCACGCGAATGTACGGCCGTTCGAGTGCGATGTGTGCAAAGCGACGTTCGTTAGGAAGACGAATCTGCAGACGCACATCTCATCCGCTCATATGAACGAGCGACCGTATACCTGTACAATTTGTGGCAAGCGTTTCAAGCAGATTAGCCATTTAAATGGCCATGTAGTCGTCCACAGTAACCTGATGCCATACAAGTGTGATTACTGCGATCGCCGATGCAATCGACTCGACAATTTGAAGAAGCATATGCGTCTTCATACAAAGAACAAGGAatga
Protein Sequence
MTKIRNAISMEWIAQNAYINNSLDHLLPGNKSQDFLIKQEAKFFQSALNSQSGQNGIVHMQVTPKEKDKEIKQESSCRDILITPCQTRSVNQLPKGLINISEKLYNKGRIDIIEMTVDSMFNYKYFLVYEDQFSKFVILKPLHSNAAREVAVNLLDILAIIGAPRVLQSGNGRKFAEQVVCELRLLWNDLFLLHGDVSKCEVSYRDFKSALESWMKKNPTKAWCEGLNFIQIVHNSTYRCQNDKVPYDVLFRQNVRENFQSMEKDTENLWTEEEWLKYLSDRKIAAAAIADTQCTSNSNQYEENAQDTQNQNAPSKVDINVFNCVKARNESLTDNAHTVVHTDELNVKNESKVHEDTQSLKCKYCQKQYMKIGHLKNHMRTHETKRLFHCKLCKKTFSVLRLYTKHMKQSHEQDKSIEESEIPVSRNTRNNTGTIAAVSKEKSMSQTTHETSDFEANEDCDSLINTKDSCGKTGKNSNQVGKRKLSTENRGSKIQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEICNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHTHKGDVTTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCLKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01229181;
90% Identity
-
80% Identity
-