Pcal010228.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- Mblk-1
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010005177.1:294212-301971[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-18 8.9e-15 55.0 0.1 1 45 34 79 34 79 0.96 2 2 3.2e-18 1.6e-14 54.2 0.0 1 43 421 464 421 466 0.95
Sequence Information
- Coding Sequence
- ATGACCGGACCGGTTGTGACCGCGGCGGCGGCGGCGGCGGCTGCGGCAGGAGTCGGTGGTGTTCCAGTGGTGGGTGCCGGGGGCGGCAGGAGGACTTACACCGAGGAGGAGCTGCAGGCCGCCCTCAGGGACATCCAGAGCGGCAAGCTCGGCACGCGGAGGGCAGCGGTGATCTACGGGATACCGCGTAGCACTCTGCGCAACAAGGTCTACAAGCTCGCGATGGAACGCGAAAGGGACGCGTCCCTGACTAGCACCCATTCACACCCTCACGAGCCCGGCGCCCCAGCCACCACCACCACCACCATCACCACCACCACCACCACCACCACTACTACTACTACAACACCACCAAATACGACCCAAAACGCCTCCGCGACCACTCCGCCCCCGCAAGTGGACGAGTTTAACACACGGCAACTTGGTGTCCGCGAGGTTGCAAGATTCGAGGTGGACGACAAAGAATTATCCGGTGCGGAAGAGGAGAAAGAAGTCGAGAAGGCCCTGCTGAAGCCTCTGCTTTCGTTGGAGGATCTCGTAAGGTTTTCTACACTCGAGGGGACCGGTGGTGATTCCCTCAGAAACCTGCTGCAACGAGGACACGAAACAGGAGCTGAATGGCCGGGTCTGGAACACGCGAACATCGGTCCCTACATACAGAAGATGTTGGCTGCCGCTGCACCATTAGGCATGGATACGCGAGATTATCGCATACCCGAAGTAATGAGGAAGCTGATGAGCGAGGATAAGAGGCTGAATAAGAATGTGAATGGAGACCAGTCGCAGTCGCATCATCATCAGCAGCATCATCCTCTCGTCGCACATCAGCAAGCACAGTCGCAGCAACGCGCACCTATGACTAACGACGACTTCAATCCCAACATCGAGGAAGAAGCCAGCGATAGTGCTCAGGGCAGAGCGATACTGAAGATTCCGTCCTATAAGCCCGCCAGTACGCCGGGTTGTTCCAGCAAGAATGGCGAGCCGACTTCCGCCGCGTTCGCCCAGAGCTTCGCGGCTGCCGCCTCGAGTCCGGGTCTCCTGGAGCGAGCTAGTCCAGCGTTCTCCGGCACCAGCAGCCCCACGAATTCGCTGGTGGGCAAAGCGGTGGCCGTCAATTTCCGCGACGTCATCGCCAAAAGCATTAGCGTCAAGTTCCAAGAGGGTCAGACGTCCGGCGCGCCTGGCATACCGGGTTGCCAACCGACTGGCGTGGTTCCATCGCAGCAGGCCATGTTGACGGATCCAAGTCCGAACTACGACAGGGACAGCCTCGTCGAGGCGGTACGCGCGGTTCAGCGCGGCGAGATGAGCGTGCATCGTGCTGGCAGCTTTTACGGAGTTCCGCACTCCACCCTTGAGTACAAAGTCAAGGAGCGGCATCTTATGAGGCCGCGCAAGAGGGACCAGAAGCAACCAGACGACAAGTCGAAGGAGACCGCGACGACGGCGGCAGCGGCAGCGGCGGCCGCGGCGATGCGGCCGGGTACTGCGGCCGTCGATAAGAAGCCGCAGCTAAAGCCGCAAAAACCGTTCACGCCGCCCGGCGGTATACCCGGTCCGAACGGACTGAAAATGCCCCCATTCATGGAGGGTATGCCCCACTTGCCGTTCGGGCCCTTCAACTTCTGGAACCCGACACCCTTCATGCCCTCCCCGTTTATGGGTGGCGCGCCGAACGTTCCGATCCTTCCGGAACAATACTTCGCGTCGCAGAGAATGCGCGGATTGCAGGAGCAACAACGAAACGCCACAATGGTACAGCAACAACACCAGCAACGAGATCGAGATGGAGTTGGCGTATCCGGAACGGCGGACGCGGCCGGAACTTCAAACTCCCGAAGCGCTTCGATCGCAAAGGCGCCGCGCGATATGGTGGAGAGCATTTACGATGGGCCCGGGGCGAACGGCAGTTTTCTGGACAATCTGATCAGGTCGAGCCTCGAGACAGGCATTCCAAGGGACCAGCGGGCGATAGCGGAGGCAAGAAACCAGCAGCAGTCGTCGTCGCAACATCCAGAAACGATGAGCAGCAAGACACTGATCGACCAGCTCTGCAGAAATTCAAGGAGGACCCCGCTGCCGCGAGTGGCGCAAGATAGTAGCGAGGACGAGAGTTATCGAGGACCAACGGGCAGGATGGTGCCAGAGAGACCGGAGCGCGTGCCTACGGTCGATCTCAGCCCCTCACCATCGGAAAGGGGTCGTACGGAGGACGGCAGCGATCGGCTGACGTCACCGCCGACGCCTCTGTCGATCTCCCGAGCGGGTAGCAGGGACGAGGACAGCACCCGTGACTCGAGGATCGATCGCAACAGCAGAGAGCGCGAGGTTCACAACGGCGGCCAGGAGGATCGCGACCGGAAGCAGCCTCTGAGTTTGCAACAGCAACAACAGCAGCAACCACAGCTGAATCATTACCCGGACTTACACAACCTCTACGCCGCGTCAACTGACAAAAAAAGTGCCTGTGATAGTAAGCTTATAGTAGATCATTCGAGCCAGAAAACTCAGCCGCAGCAACAACAAAAGGAGTACGCTGCCGTGAGCGGGCTGGTCGTGCAACTGCAGAGGGGCTACAACACCGCGAGCAGCAGATCCGGCGAGCCGACCAACAGCCAGCAGCCGGCGGCAGCGGAGCAGCGCGGCACCGCGCTCAGCATGGAGGACTCCGTAGAGTAG
- Protein Sequence
- MTGPVVTAAAAAAAAAGVGGVPVVGAGGGRRTYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERERDASLTSTHSHPHEPGAPATTTTTITTTTTTTTTTTTTPPNTTQNASATTPPPQVDEFNTRQLGVREVARFEVDDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEGTGGDSLRNLLQRGHETGAEWPGLEHANIGPYIQKMLAAAAPLGMDTRDYRIPEVMRKLMSEDKRLNKNVNGDQSQSHHHQQHHPLVAHQQAQSQQRAPMTNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFAQSFAAAASSPGLLERASPAFSGTSSPTNSLVGKAVAVNFRDVIAKSISVKFQEGQTSGAPGIPGCQPTGVVPSQQAMLTDPSPNYDRDSLVEAVRAVQRGEMSVHRAGSFYGVPHSTLEYKVKERHLMRPRKRDQKQPDDKSKETATTAAAAAAAAAMRPGTAAVDKKPQLKPQKPFTPPGGIPGPNGLKMPPFMEGMPHLPFGPFNFWNPTPFMPSPFMGGAPNVPILPEQYFASQRMRGLQEQQRNATMVQQQHQQRDRDGVGVSGTADAAGTSNSRSASIAKAPRDMVESIYDGPGANGSFLDNLIRSSLETGIPRDQRAIAEARNQQQSSSQHPETMSSKTLIDQLCRNSRRTPLPRVAQDSSEDESYRGPTGRMVPERPERVPTVDLSPSPSERGRTEDGSDRLTSPPTPLSISRAGSRDEDSTRDSRIDRNSREREVHNGGQEDRDRKQPLSLQQQQQQQPQLNHYPDLHNLYAASTDKKSACDSKLIVDHSSQKTQPQQQQKEYAAVSGLVVQLQRGYNTASSRSGEPTNSQQPAAAEQRGTALSMEDSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125824;
- 90% Identity
- iTF_00182544;
- 80% Identity
- -