Phis014350.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004694.1:11003583-11007226[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.093 7.6e+02 2.0 0.0 20 46 240 266 235 273 0.86 2 7 0.0001 0.83 11.4 0.0 21 46 300 325 296 332 0.85 3 7 0.022 1.8e+02 4.0 0.2 23 44 330 351 324 356 0.88 4 7 0.0011 8.9 8.1 0.1 21 44 356 379 352 388 0.86 5 7 0.16 1.3e+03 1.2 0.1 20 44 383 407 378 417 0.75 6 7 0.57 4.7e+03 -0.6 0.2 21 32 412 423 406 439 0.73 7 7 0.0014 11 7.8 0.1 21 44 440 463 433 468 0.89
Sequence Information
- Coding Sequence
- atggaaacaaaTTATGATAAAATCTGTAGAATATGTCTCAGGGAGTCTAATGATATGGAAGCActgtttaaattgaaatttacgaAAGATGAGACTTTTGCAGTtgattttatgagaaaaatcaCGGATTTGAAGATTGTAGAAATGGTTACATTACCTAGTAATATATGTAGCCAATGTGTAGAAAATGTTAAAGCGGCTTTTAATTTGGTGCAGTTGTGTATGACTTCTGAAGCTTCTTTAAGAAATCAGGAAACTCGCAGGATGTTAAGACAGATTGAAGAAGAAGCTTTAGGGGAAGaagaaattgtaataaaatgtgaAGACTTAATTGAAccagaaaatataaatgtacaacAAAATGATCAGTGTACAATGGATTATATGTCTGACCGAGTTTCTGATGACAATTTAAGTGAAGATGAGGTAACACAAGAAGACTTGTATTTTACTACGGTTAAAGtcaaagataaatataaatgtgaAGTGTGTGCATTGCCattcaataataaaacaaaatttattaaacataaaaaaacacaTGATGACTCTAAACCGTTTAAGTGCAAAGAATGTTTACAAACATTctctaaaaaattacatttaaatgtACATTTAAGGTCACACATTAAGCAAGAAGATAAAAAATTTGCATGTGAAATGTGTGGGCAACAGTTTACTTTTGAGTACCTTCTGAAACAACATGAATATAAACACAAGGATGAAAAACCATTTCCTTGTACAAAATGTGATAAAGGTTGTTTGACTGCTGAGAGTTTAAGACGCCACATGAAAGTCCATGATGAGGCCTATACAAAAAAGACACACACTTGTCACGTTTGCCAAAAAAGTTTTCCATATCCAAGCTTCCTTGCAGAACATATGAAATATCACACTGGAGAGAAACCTCATTTATGCTCAATATGCGGAAAGGTATTTCGTCAAAGTGGGTCCTTACATTATCACCAAAGAATCCATACTGGTTACAAGCCCTTTACGTGTAAAATCTGCGAAGAAAATTTTAGGTCACAGAGTATTCTAAGGGTGCATATGCGGAAGCACACTAATGAAAGGCCATATATTTGTGATGTATGCGGAATATCATTTAGGCAATCAACAGATCTGAAATCCCACCGTAGAACACATACAGGAGAGAAACCAGTATTGTGTACTATATGTGGAAAGAAAATGTCCACTACTGGACAACTGACCATCCATCTAAGGTCCCACACAGGAGAGAAACCATACTCCTGCTCAGTTTGCTCTCGAGCCTTCACTACCAAATCCGTCCTGGTAAAACATCAAAGGATACACACTGGAGAACGTCCTTATGTATGCGATATATGTGGTCGAGCTTTCAATCAAAGCTCAACTCTTAGAACACACACAAAAACCCATAAAACTAATACAAACaataagaagaaaaagaaagtaaaaaAGCAACTAAGAATTGAAACTAAGGAACTGTGTTTTGGAGATAGTACAGTTGtggtttttaaaaacagtaatgGAGTTTCTGAGAACGGCGATGAACAGTATTTAGTGGATGACGTGGTGGAAATCAGCGGAGCCCAGTGTGAGAATGTTAAAGCAGAATTTACTGTTATTCTTCCAGCTCCTATTCCGCTGTTGTGA
- Protein Sequence
- METNYDKICRICLRESNDMEALFKLKFTKDETFAVDFMRKITDLKIVEMVTLPSNICSQCVENVKAAFNLVQLCMTSEASLRNQETRRMLRQIEEEALGEEEIVIKCEDLIEPENINVQQNDQCTMDYMSDRVSDDNLSEDEVTQEDLYFTTVKVKDKYKCEVCALPFNNKTKFIKHKKTHDDSKPFKCKECLQTFSKKLHLNVHLRSHIKQEDKKFACEMCGQQFTFEYLLKQHEYKHKDEKPFPCTKCDKGCLTAESLRRHMKVHDEAYTKKTHTCHVCQKSFPYPSFLAEHMKYHTGEKPHLCSICGKVFRQSGSLHYHQRIHTGYKPFTCKICEENFRSQSILRVHMRKHTNERPYICDVCGISFRQSTDLKSHRRTHTGEKPVLCTICGKKMSTTGQLTIHLRSHTGEKPYSCSVCSRAFTTKSVLVKHQRIHTGERPYVCDICGRAFNQSSTLRTHTKTHKTNTNNKKKKKVKKQLRIETKELCFGDSTVVVFKNSNGVSENGDEQYLVDDVVEISGAQCENVKAEFTVILPAPIPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110784;
- 90% Identity
- iTF_01227573;
- 80% Identity
- iTF_01227573;