Phis019325.2
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004694.1:76627274-76629530[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2e-05 0.16 13.7 0.0 21 49 133 161 128 166 0.92 2 7 0.96 7.8e+03 -1.3 0.0 24 45 213 234 192 238 0.75 3 7 0.00059 4.8 9.0 0.0 21 44 238 261 234 267 0.90 4 7 0.14 1.1e+03 1.4 0.2 27 45 303 321 298 328 0.89 5 7 0.29 2.3e+03 0.4 0.1 21 43 325 347 317 350 0.80 6 7 0.0075 61 5.4 0.0 11 48 342 380 336 382 0.82 7 7 0.036 3e+02 3.3 0.1 21 41 382 402 378 409 0.87
Sequence Information
- Coding Sequence
- ATGACAATCTTAGAACAATCAAAACAAGGCAGTTTTAGTCCTACTCGTGACCCACCGGATTATGAATCAGACATTCCAGACTCTCATTCATGTGATGAAAGACATCAACTAATCCACAGTGTTGTAAGAGCACATAAATGTGATATTTGTGGAAAAGGATTCAAGAGAGTCTTTTCAAGGGACAAACATAGAAAGATTCACAGTGAAGTAAAATTGCTTGGAGGTACAGAGTCTCCCAAATATAGTTGCACACAGTGTGATAGAGTCCTGACTTCCCACTCAGCATTAAGCAGTCATATGAAAACCCATACTGGTGAAAAACCGTATTCTTGTACATACTGTGGTAAACGCTTTCCGTATGTTAGTAGCCTAACTGTTCATACTCGCTTGCATAcagGTGAAACTCCATTTATTTGTTCAATATGCAATAAAGGCTATCGTAGTTCAACTAGCCTTAAAAAACACAAGGAAGTTAAACATTATGAAATGGAGGATGTTAAACAAGAAGAACGTGGGGATGACAAAATTGGGGACTCGTCTAATGATTTGGATAAAAGAGAATGTAcgatttgtaataaaatacttCACAAACATGGATTTGGCACCCATATGAGAATTCACACCATTGAAAAGAAGAAATTTGTGTgtacattttgtaataaaaatttccagaaaaacTCTCATCTTGAACGGCATATAAGGATACATACAGGAGAAAGGCCTTATATCTgcaaaatatgcaataaaactTTCAAACAAGATGGAGACCTCAAAAGACATGTTTTAACACACACAGGTGAAAAACAATACCAGTGTCAGCACTGCGGTAAACAATATTATACAAAAGGATCACTAGATACTCACATGAGTGTACATACAGGTATCAGACGACCAGTCAATTATGAGTGCAACATTTGTAAGAAATCGTTCAGACAATGTACTCACTTCAAAACACACATGAATTCACATACTGGGGAAAGGCCGTATTTGTGTACCATCTGTGGCAAGTCCTTCACTGCAAGCGGCACATTAAAAGTACACACTAGAATTCACACAGGTGAAACTCCTTTTGTTTGTTCTTATTGCAACAAAGGGTACAACAATTCGAGTAGCTTGAAGCGGCACATTATGAGGAATCATACTGGAGAAAAACCGTATGTGTGTATGATTTGCCATAAACGGTTTCACGACTCTAGGATATTCCGGAGCCCAACATCAGCTCGTTCCCCATCTTCAAGGCAAATATTGACACAAGGCATATCACTGGATGTAGCAGATAAGCAGCGGTAA
- Protein Sequence
- MTILEQSKQGSFSPTRDPPDYESDIPDSHSCDERHQLIHSVVRAHKCDICGKGFKRVFSRDKHRKIHSEVKLLGGTESPKYSCTQCDRVLTSHSALSSHMKTHTGEKPYSCTYCGKRFPYVSSLTVHTRLHTGETPFICSICNKGYRSSTSLKKHKEVKHYEMEDVKQEERGDDKIGDSSNDLDKRECTICNKILHKHGFGTHMRIHTIEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKICNKTFKQDGDLKRHVLTHTGEKQYQCQHCGKQYYTKGSLDTHMSVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCNKGYNNSSSLKRHIMRNHTGEKPYVCMICHKRFHDSRIFRSPTSARSPSSRQILTQGISLDVADKQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -