Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:2142436-2146545[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0013 0.13 14.4 6.2 1 23 275 297 275 297 0.99

2 14 0.005 0.51 12.5 2.0 1 23 306 328 306 328 0.97

3 14 0.00025 0.026 16.6 5.3 1 23 337 359 337 359 0.98

4 14 0.00025 0.026 16.6 3.5 1 23 368 390 368 390 0.98

5 14 0.00028 0.029 16.4 0.3 1 23 399 421 399 421 0.97

6 14 0.0018 0.18 13.9 4.2 1 23 430 452 430 452 0.97

7 14 0.053 5.4 9.3 0.6 1 23 461 483 461 483 0.98

8 14 0.0022 0.22 13.6 4.1 1 23 492 514 492 514 0.98

9 14 0.0019 0.19 13.8 1.6 2 23 521 542 520 542 0.97

10 14 0.0026 0.27 13.4 0.5 1 23 551 573 551 573 0.98

11 14 0.00027 0.028 16.5 3.9 1 23 582 604 582 604 0.98

12 14 0.00031 0.031 16.3 0.5 3 23 615 635 613 635 0.97

13 14 0.0028 0.29 13.3 2.0 1 23 644 666 644 666 0.98

14 14 0.013 1.4 11.1 3.3 2 23 676 697 676 697 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0013	0.13	14.4	6.2	1	23	275	297	275	297	0.99
2	14	0.005	0.51	12.5	2.0	1	23	306	328	306	328	0.97
3	14	0.00025	0.026	16.6	5.3	1	23	337	359	337	359	0.98
4	14	0.00025	0.026	16.6	3.5	1	23	368	390	368	390	0.98
5	14	0.00028	0.029	16.4	0.3	1	23	399	421	399	421	0.97
6	14	0.0018	0.18	13.9	4.2	1	23	430	452	430	452	0.97
7	14	0.053	5.4	9.3	0.6	1	23	461	483	461	483	0.98
8	14	0.0022	0.22	13.6	4.1	1	23	492	514	492	514	0.98
9	14	0.0019	0.19	13.8	1.6	2	23	521	542	520	542	0.97
10	14	0.0026	0.27	13.4	0.5	1	23	551	573	551	573	0.98
11	14	0.00027	0.028	16.5	3.9	1	23	582	604	582	604	0.98
12	14	0.00031	0.031	16.3	0.5	3	23	615	635	613	635	0.97
13	14	0.0028	0.29	13.3	2.0	1	23	644	666	644	666	0.98
14	14	0.013	1.4	11.1	3.3	2	23	676	697	676	697	0.97

Sequence Information

Coding Sequence: ATGGAAAAATGTGAAGGAAAAGTTTGTAGACTCTGCCTTTATACTGTAAAAGATGAAAATTTTAGAGTGATAGAAGAATCTTTAATAGAAGTTTTAAGAGCTGTTTCTCTAAACTTGAACTGGGAGAAAAATGAACTTATAATGTGCAGTGCCTGTTCTGCAAAGTTGTTTGCAGCATTCGACTTTAAATCCACATGTCTGTATGTTGAGGAAAAGATAGTACCTTTTGTTAACACCAATCAAGTGTCCTCAGTTGATttaagagaaatttatttgaaggaacaCGGAAATGAGTATAAATTCGAAATATTCAATCAGAAAGTGTGCCGATTATGTATGCAGCTGGGAAATGACGGATTTGTGTCTTTACATGAATTGGCGGTCGATATGACCCTTAAATATATACCAGAGATTGATTTCAGTATCGTCAAAAATCCCGTTATTTGCAACTCGTGTTTCGATTCCTTTGTGACCCACGCTAGTTTCATAAAGAACTGTTTGGATGCAGaagagaaatttaaaaacatttataaagtTAACGATGGTGGACCGTCTTTCCAACCATTTCAATCAGTTAAAATTGAAGGCACCGAAATAAATCAGGAAATGTGTGAAGTGGAAGAAATAGCGAGATTGATAAAGACTGAAGGCACGGAGACGAAATCAGGAATAAATGaggacatttttattaaaaccgaagaaattgaaataaaatctgAAGAAAACGAACAGGACAGATATCAAAAATCACAACATCTGAAAGAATCACATGAAGCCAGTCAGAGGCTGATGTTACAAAAGGATGCTGCGAGTCCAGATATGTACAAGTGCCTTCATTGCGATTACAAAACCAGGCACTTGAGCGTTCTTAAGAAACATATGTTGACACATACAGTTGCGCTAGAAATACAGTGGCACGAATGTGAATTATGCGCCTATAAGTCGAAGAGTAAAAAAAACTTGGGTAGGCACATGCTCATGCATAAAGATACTTCAGAGATGCAATTGTACGAATGTCATTTATGCAGCTATAAGTCGAAACGGAAAAGTAACTTGAAGCAGCACACGTTGACGCACAAATATGCTCCCGAAATGCAGTGGCACGAATGTGATCTATGCCAATACAAATCAACAAGCAAGGACTATTTGAGAAAACACATGTTGACCCATAAAAATCCTTCGCAAATAGAGTGGTACGActgtgatttatgtgactataaggcAAAGAGTAAAAAAAATTTGGCTAGGCACATGGTCATACATAAAGACTCTTCAGAAATACGGTTTCACGAGTGTGATTTATGTAACTATAAGTCAAAACGAAAAAGGAATTTGAAAGAGCACACGTTGACACATAAATACGCTGCGGTTACGCAGGTGTACGAATGTAAATTGTGCGCCTATAAGACAAAGATTAAGACATATTTGGGTAGGCATATGATCATACATAAAGATGTCTCAGAAACTCAGTTGTACGAATGCGATTTATGTAGTTATAGGTCAAAGCGGAAATGTAACCTGAAGCAGCATGTGTTGACACATAAATATGTTTCCGAAATGCAATGCGATCAATGTGGTGATAAACTGAAAAACAAAGAGAACTTGAAAAAACACAAGTTGACGCATACAGATCCTTCAGCAATACGGTGGTACGAATGTAATTTATGCGTCTATAAATCGGAGAGTAAAAAAAATTTAGGTCGGCACATGCTTATACATAAAGATACTTTGGAAATACAGTGGTACCACTGTCCTTCGTGTGACTATAAGTCCAAACGaaaaaataacttgaaacagcACATGGTGACGCATGAAAATAGTTCAAAAGTGCAATGGTACGGATGTGATTTGTGCGGTTATAAATCGACGAGCAAAGGTAATTTAAAAAAGCACACGTTGATACACAAAAATCCTTCAGAGATAATGTGGTACAATTGTGATTTTTGCGCCTATAAGTCAAAGAGTAAGAAAAATCTGGGAAGGCACATGTTGACGCATAAAAGTCCTTCGGAAATTGAATGGAATGAATGCGATGTTTGTGTCTTTAAGTCGAAATACAAAGATTGTTTGAAAAGGCATATGATGACACATGCAAATTCTACGGAAGTACAATAA
Protein Sequence: MEKCEGKVCRLCLYTVKDENFRVIEESLIEVLRAVSLNLNWEKNELIMCSACSAKLFAAFDFKSTCLYVEEKIVPFVNTNQVSSVDLREIYLKEHGNEYKFEIFNQKVCRLCMQLGNDGFVSLHELAVDMTLKYIPEIDFSIVKNPVICNSCFDSFVTHASFIKNCLDAEEKFKNIYKVNDGGPSFQPFQSVKIEGTEINQEMCEVEEIARLIKTEGTETKSGINEDIFIKTEEIEIKSEENEQDRYQKSQHLKESHEASQRLMLQKDAASPDMYKCLHCDYKTRHLSVLKKHMLTHTVALEIQWHECELCAYKSKSKKNLGRHMLMHKDTSEMQLYECHLCSYKSKRKSNLKQHTLTHKYAPEMQWHECDLCQYKSTSKDYLRKHMLTHKNPSQIEWYDCDLCDYKAKSKKNLARHMVIHKDSSEIRFHECDLCNYKSKRKRNLKEHTLTHKYAAVTQVYECKLCAYKTKIKTYLGRHMIIHKDVSETQLYECDLCSYRSKRKCNLKQHVLTHKYVSEMQCDQCGDKLKNKENLKKHKLTHTDPSAIRWYECNLCVYKSESKKNLGRHMLIHKDTLEIQWYHCPSCDYKSKRKNNLKQHMVTHENSSKVQWYGCDLCGYKSTSKGNLKKHTLIHKNPSEIMWYNCDFCAYKSKSKKNLGRHMLTHKSPSEIEWNECDVCVFKSKYKDCLKRHMMTHANSTEVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227598;
90% Identity: -
80% Identity: -