Phis029141.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:2105859-2114892[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0014 0.14 14.2 6.2 1 23 275 297 275 297 0.99
2 16 0.0056 0.56 12.4 2.0 1 23 306 328 306 328 0.97
3 16 0.034 3.4 9.9 4.2 1 23 337 359 337 359 0.98
4 16 0.00032 0.033 16.2 3.9 1 23 368 390 368 390 0.98
5 16 0.0075 0.75 12.0 0.5 1 23 401 423 401 423 0.97
6 16 0.002 0.2 13.8 4.2 1 23 432 454 432 454 0.97
7 16 0.015 1.5 11.0 0.6 1 23 463 485 463 485 0.98
8 16 0.032 3.2 10.0 1.2 1 23 494 516 494 516 0.97
9 16 0.0024 0.24 13.5 1.0 2 23 523 544 522 544 0.97
10 16 0.013 1.3 11.2 1.9 1 23 553 575 553 575 0.98
11 16 0.00026 0.026 16.5 6.9 1 23 584 606 584 606 0.98
12 16 3.9e-05 0.004 19.1 1.6 1 23 615 637 615 637 0.99
13 16 0.011 1.1 11.4 0.9 1 23 646 668 646 668 0.97
14 16 0.00013 0.013 17.5 4.3 1 23 677 699 677 699 0.98
15 16 0.00046 0.046 15.8 0.7 3 23 710 730 709 730 0.98
16 16 0.0012 0.12 14.4 2.8 1 23 739 761 739 761 0.98

Sequence Information

Coding Sequence
ATGGAAAAATGTGAAGTAAAAGTTTGTAGACTATGCCTTAATAAtgtaaaagatacaaattttaGAGTGATAGAAGAATCTTTAATAGAAGTTTTAAGAGCTGTTTCTCTAAACTTGAAGTGGGGAAAAAATGGGCATATAATGTGCAGTGCCTGTTCTGCAAAACTGTTTGCAGCATTCGACTTTAAATCCACATGTCTGTATGTTCAGGATAAGATTGTACCTTTTGTTAACACCAATGAGGTGTCCTCAGTTGATttaagagaaatttatttgaaggaacaCGGAAATGAGCATCAAGTTGAAATATTCAATCAGAAAGTGTGCCGATTATGCATGCAGCTGGGAAATGACGGATTTGTGTCACTACATGAATTGGCGCTCGATATGACCCTTAAATATATACCAGAAATTGATTTCAGTATCGTCAAAAATCCCGTTATTTGCAAGTCGTGTTTCGATTCCCTCGTGACCCACACTAGTTTCATAAAGAACTGTTTGGACGCAGaagagaaatttaaaaacatttataaagtTAATGATGGTGGATCGTCTTTCCAACCATTTCAATCAGTTAAAATTGAAGGCACCGAAAGAAAGCAGGAAATGTGTGAAGTGGAAGAAATAGCGAGATTGAAAAAGACTGAAGGCACGGAGACGAAATCAGTAATAAATGaaggaatttttataaaaaccgaagaaattgaaataaaatctgAAGAAAACGAACAGGACAGatatcaaaaattacaaaatctgAAAGAATCACACGAAGCCAGTCAGGGGCTGATGTTACAAAAGGATGCTGCGAGTCCAGATATGTACAAGTGCCTTCATTGCGATTACAAAACCAGGCACTTGAGCGTTCTTAAGAAACATATGTTGACACATAAAGTTGCGCTAGAAATACAGTGGCACGAATGTGAATTATGCGCCTATAAGTCGAAGAGTAAAAAAAACTTGGGTAGGCACATGCTCATGCATAAAGATACTTCAGAGATGCAATTGTACGAATGTCATTTATGCAGCTATAAGTCGAAATGGAAAAGTAACTTGAAGCAGCACACGTTGACGCACAAATATGCTCCCGAAATGCAGTGGCACGAATGTGATCTATGCAAATACAAATCAACAAGCAAGGACTATTTGAGAAAACACATGTTGACGCATAAAAATCCTTCGCAAACGCAAATAGTGTGGTACGATTGTGATTTATGTGCCTATAAGACAAAGAGTAAAAAAAATTTGGGTAGTCATATGCTGATACATAAAGACTCTTCAGAAATACGGTGGCACGAGTGTGATTTATGTAACTATAAGTCGAAACGAAAAAGGAATTTGAAAGAGCACACGTTGACACATAAATACGCTGCGGTTACGCAGGTGTACGAATGTAAACTGTGCGCCTATAAGACGAAGATTAAGAGAAATTTGGGTAGGCATATGATCATACATAAAGATGTTTCAGAAACCCAGTTGTACGATTGCGATTTATGTAGCTATAGGTCAAAGTGGAAAACTAACCTGAAACAACACATCTTGACACATAAATATGTTTCCGAAATGCAATGCGATCAATGTGGTGATAAACTGAAAAACAAAGAGAACTTGGAAAAACACAAGTTGACGCATACAGATCCTTCAGCAATACGGTGGTACGAATGTAATTTATGCATCTATAAGTCGAAGAGTAAAAAAAACTTGGATAGGCACATGCTCAGACATAAAGATACTTCAGAGATGCAATGGCACGAATGTCATTTATGCAGCTATAAGTCGAAACGGAAAAGTAACTTGAAGCAGcacatgctgacacacaaaTATGCTCCCGAAATGCAGTGGTACGAATGTGATCTGTGCGAATACAAATCAACAAGCAAGGactatttgaaaaaacacaTGTTGACGCATAAAAATCCTTCGCAGATACAGTGGTACGATTGTGATTTTTGCGCCTATAAGACAAAGAGTAAAAAAAATTTAGGTAGTCATATGCTGATACATAAAGATACTTTGGAAATACAGTGGTACCACTGTCCTTCGTGTGACTATAAGTCCAAACGaaaaaataacttgaaacaacaCATGCTGACGCACGAAAATAGTTCAGAAGTGCAATGGCACGGATGTGATTTGTGCGGCTATAAATCCAAGAGCAAAGGTAATTTAAAAAAGCACACGTTGGTACACAAAAATCCTTCAGAGATAATGTGGTACAATTGTGATTTTTGCTCCTATAAGTCAAAGAGTAAGAAAAATCTGGGAAGGCACATGTTGACGCATAAAAGTCCTTCGGAAATTGAATAG
Protein Sequence
MEKCEVKVCRLCLNNVKDTNFRVIEESLIEVLRAVSLNLKWGKNGHIMCSACSAKLFAAFDFKSTCLYVQDKIVPFVNTNEVSSVDLREIYLKEHGNEHQVEIFNQKVCRLCMQLGNDGFVSLHELALDMTLKYIPEIDFSIVKNPVICKSCFDSLVTHTSFIKNCLDAEEKFKNIYKVNDGGSSFQPFQSVKIEGTERKQEMCEVEEIARLKKTEGTETKSVINEGIFIKTEEIEIKSEENEQDRYQKLQNLKESHEASQGLMLQKDAASPDMYKCLHCDYKTRHLSVLKKHMLTHKVALEIQWHECELCAYKSKSKKNLGRHMLMHKDTSEMQLYECHLCSYKSKWKSNLKQHTLTHKYAPEMQWHECDLCKYKSTSKDYLRKHMLTHKNPSQTQIVWYDCDLCAYKTKSKKNLGSHMLIHKDSSEIRWHECDLCNYKSKRKRNLKEHTLTHKYAAVTQVYECKLCAYKTKIKRNLGRHMIIHKDVSETQLYDCDLCSYRSKWKTNLKQHILTHKYVSEMQCDQCGDKLKNKENLEKHKLTHTDPSAIRWYECNLCIYKSKSKKNLDRHMLRHKDTSEMQWHECHLCSYKSKRKSNLKQHMLTHKYAPEMQWYECDLCEYKSTSKDYLKKHMLTHKNPSQIQWYDCDFCAYKTKSKKNLGSHMLIHKDTLEIQWYHCPSCDYKSKRKNNLKQHMLTHENSSEVQWHGCDLCGYKSKSKGNLKKHTLVHKNPSEIMWYNCDFCSYKSKSKKNLGRHMLTHKSPSEIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01227631; iTF_01227648;
90% Identity
-
80% Identity
-