Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: Zfpm1
Assembly: GCA_963924545.1
Location: OZ004695.1:6024275-6027379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7 7e+02 2.6 0.1 2 23 7 28 6 28 0.92

2 15 0.027 2.8 10.2 1.2 1 23 552 575 552 575 0.90

3 15 0.094 9.5 8.5 0.1 2 23 654 676 653 676 0.92

4 15 0.00099 0.1 14.7 1.1 1 23 684 706 684 706 0.98

5 15 0.001 0.1 14.7 1.4 2 23 709 730 708 730 0.97

6 15 0.051 5.2 9.3 2.5 1 23 736 758 736 758 0.80

7 15 0.00018 0.019 17.0 5.1 2 23 765 786 764 787 0.95

8 15 0.71 72 5.7 1.1 5 23 800 818 799 818 0.95

9 15 0.00012 0.012 17.6 2.3 3 23 825 846 824 846 0.97

10 15 0.1 10 8.4 0.2 2 23 862 882 861 882 0.97

11 15 0.00034 0.034 16.2 1.4 1 20 888 907 888 910 0.92

12 15 0.00022 0.022 16.8 0.2 1 23 918 940 918 940 0.99

13 15 0.0021 0.21 13.7 2.9 1 23 946 968 946 968 0.97

14 15 2.2e-06 0.00023 23.0 2.2 1 23 974 996 974 996 0.98

15 15 0.0027 0.28 13.3 7.0 1 23 1002 1024 1002 1025 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7	7e+02	2.6	0.1	2	23	7	28	6	28	0.92
2	15	0.027	2.8	10.2	1.2	1	23	552	575	552	575	0.90
3	15	0.094	9.5	8.5	0.1	2	23	654	676	653	676	0.92
4	15	0.00099	0.1	14.7	1.1	1	23	684	706	684	706	0.98
5	15	0.001	0.1	14.7	1.4	2	23	709	730	708	730	0.97
6	15	0.051	5.2	9.3	2.5	1	23	736	758	736	758	0.80
7	15	0.00018	0.019	17.0	5.1	2	23	765	786	764	787	0.95
8	15	0.71	72	5.7	1.1	5	23	800	818	799	818	0.95
9	15	0.00012	0.012	17.6	2.3	3	23	825	846	824	846	0.97
10	15	0.1	10	8.4	0.2	2	23	862	882	861	882	0.97
11	15	0.00034	0.034	16.2	1.4	1	20	888	907	888	910	0.92
12	15	0.00022	0.022	16.8	0.2	1	23	918	940	918	940	0.99
13	15	0.0021	0.21	13.7	2.9	1	23	946	968	946	968	0.97
14	15	2.2e-06	0.00023	23.0	2.2	1	23	974	996	974	996	0.98
15	15	0.0027	0.28	13.3	7.0	1	23	1002	1024	1002	1025	0.96

Sequence Information

Coding Sequence: ATGGACTCAACCAACATTGTTTGCCCTGTTTGTACCTTATATCTAAGGCCAGGTATAACCCTGAAACAACATTTGTCCTCCCATCCAAAGCAGAAGGTGATAGAAGCCTTGGTCAAATTGTCTGTTGGTGAGGAGACACAAAAAAGTCAAACTGTGCCCACCCAACCAGATTTAAGTACTGCTAGCAGTTCACAGGCCAACTCAGCTGTAGTCAATCCATCATGGAATCAAGTACCTCCAGGACATTTGGGGCCTCCACCTCATTTGACCCCAATACATGGAAACCATGTATTCATATATCAACAAAGTATGAGCACGACTTCTCCCCAACCAAATGTACTAAATGTAAACCCTCTTTCGCAACAATATGTGTATCCTACTGTTTTCAACCCCCAGATGATGCCATATGTTTATCAGCAGCAGCAAGTAATAATGTCTAGTAATTCTTTGCCACCTCATGTTAGGGCTTTACCTTTCGATTTGCCTAATGCATCGCAAGCTACTGTACCAGAATCACcagttgaaaatgaaaatgagaaTAATGTTCCACAGAGCAGAATAGAGGAAATTGAGGATGTTAgtggggagtcgacccaacccgAAGAAGTTGCCAAAGAAACGTTTAACAGTACTTCTTCAGAGCCTCCATCCGTTAAGAAACAAGAAGAGGTGGAAGTAATCAACCACGATGTGAAAACTATGGAAGACTTTGAAAATGAACAGTCAGTTGTAAATGAGATACCGCCTGAAGACTATGCTAATGAAAACAGCACTAATTATGACCATGAACAAGTTGATCACGAGGAATGCATCGCTGGTTCTCCACGTTCCCAAACCACTTCTCATTCAGACTGGGCATTCCATTCAGACTTGAACAAAGCTTGTCAGACGCAAAATACAAGCAATACTTCACCCAGGTCACATATTTTAGAAGAGGAGGAGGCAGAATTAGATAACCAAGAAAACAATGAAGATCAACccgaatatttttatattcatcaTCAAAATGAGGAATTTGTGAAACAGCAAACTCAAGACTATTCAGATCATAATATTATACCATACACAACAGTTAAGTTAAACGCTGATAGTTATGAACAGACAGACCCAATTTATACTTCCGCTAATATTCTACACGGCGGTGACCACTTGGATTTTGTCAACATGGATGACATCGTTATCATAAACGATTTTTCTTCAAATCAAGTCATCTCACAAGTTGATAATTTTGGGAACATTTCACCGGATAGGCCAGGAGTTCTAATGACTATAGGAGACATCCAGGAGCAGCCAAAAAGTGACTTTATAGAGCAGCGTGACTTGGAAGAGAGCATGTCCAGGGAAAGCTCTCATGTGAACATAAGATCTGACGAAAGAATGCCAGCAAGGGGTGAATTATCTGGTCAGGAGAGCATTGGGGGTGCTAGTGATATAACATGGAACCGCATGCAGTACCAAGAAGGTAGTTCAGGGATGTCACACTCTTACGATTTAATTGGGAGGGAGACTTGGGAAGCATCTGATAGTGATAGTGTGGAAGTGCCATCTATTCAAAGGAGACACCCAGTGCAAATGGAGTATCATCATATGGAGTTTAACGATAATGAAAATGACAATCCTACGATTGTCAGTTATTCTGGGCCTCCACTTAATTTCAAATGCCCCACTTGTCACGAAGGTTTCGCTTCATCGAAAGAAAGAAAGGAGCACGAGATCGAGAAACACCCAGAGAAAGCAAATAGAAGTAGTAATTTGATAGGTGCCGATATTGGAAGGAAAAAGGTCAAAAAGCTTGTGGTGAAGTTAAAGTCAGATAAGACTGAAACCGACAGCAGTTATGATAATGTTTTCACTAATAAACTGAAAATAGAGAGCAACGCTGAGCAGAACGAGGCTCCCGTCGTGGAGCCTGAGATTAAACAGGATGAACCCAATTTGGAACTAAAGAAGTTGAAGATAGTTTGTCCAATTTGTGATTGTGTGGTGCAAAATGCAAAGGCTCTAAAACTGCATAAATTAGAAGTTCACAAGGAAAATGCGAGTGTTCGACACAAGTGTTTGACATGTGGAGAAGCTTTTCCAAACGAGTATAAGTACACAGACCATCTTAAAATACACCCTCTGGAATGCCGGTTATGTGGCAAACTATTTTATAGAAGACAAAATATTCAGTTGCACATGAAAAGACATCTTGGACTTAAACCATATAAATGTGAAATCTGCCAAAAATCATTTGTTACGAGACAGAAGCACGatgaacataaaaatattcacACTGGCGAGTCACCCATCAAGTGTAATTTGTGTGAAGAAACATTCAGGAGGCATTCAAATCTGGTACAGCATCGTAACAGACATCATTTTCAACTCAAGAAGAAAGTGAAGGATTACATATGCCAGTGTGGGGAAATCTTTCACTCCAAGAAAAAATTAGCATGGCACAAAGAAATTCATGACTCCAAGCCCAAGGCCTGTACTCAGTGTAGCGAAAAGTTCGTTCATATGTCTAGTTTAACGAGACATATGCGCCGCGCACACAATGAAAAGTTCCTCCCGCAAGAAGAGAGAGGTAATGAAAACGTACAATGCCCTATTTGTAAAGGTACTTACCTCCGATCATCCTTGGACGTGCACATTCGTAAGCATAGTGGTCAGAGGCCCTTCACTTGCTTGATTTGCAACAAGGATTTCACGACCAAATGGAATCTTAAATTGCACAAGTGGACACACGCAAGTCGCACGTCCAAGCCCTTCAAATGCGATCAGTGTAAGGGCGCCTTTATCAGAGAGTCTGATTACATCGCACACATGAACTCTCATAAGAGTGTACGACCTTACACGTGCAATTACTGCGGCGCTCAGTTTATAAGGAAGTACAACTGCATACGGCATGTTAAGGAACACGAAAACAACAAGACGTTTGTATGTCAAGTTTGCGGGAAGTCTTTTCATAGGTCATATTACTTAAAGGATCACATGCTTGTACATAGCGGCATTCGACCTTACTCATGTCATATTTGTGGGAAAACTTCCACCACCAAGTCTAATCACAATAAACATGTACAAATCCATCATGCTAGAGAACCAGTTAGTACAGAAAATTGA
Protein Sequence: MDSTNIVCPVCTLYLRPGITLKQHLSSHPKQKVIEALVKLSVGEETQKSQTVPTQPDLSTASSSQANSAVVNPSWNQVPPGHLGPPPHLTPIHGNHVFIYQQSMSTTSPQPNVLNVNPLSQQYVYPTVFNPQMMPYVYQQQQVIMSSNSLPPHVRALPFDLPNASQATVPESPVENENENNVPQSRIEEIEDVSGESTQPEEVAKETFNSTSSEPPSVKKQEEVEVINHDVKTMEDFENEQSVVNEIPPEDYANENSTNYDHEQVDHEECIAGSPRSQTTSHSDWAFHSDLNKACQTQNTSNTSPRSHILEEEEAELDNQENNEDQPEYFYIHHQNEEFVKQQTQDYSDHNIIPYTTVKLNADSYEQTDPIYTSANILHGGDHLDFVNMDDIVIINDFSSNQVISQVDNFGNISPDRPGVLMTIGDIQEQPKSDFIEQRDLEESMSRESSHVNIRSDERMPARGELSGQESIGGASDITWNRMQYQEGSSGMSHSYDLIGRETWEASDSDSVEVPSIQRRHPVQMEYHHMEFNDNENDNPTIVSYSGPPLNFKCPTCHEGFASSKERKEHEIEKHPEKANRSSNLIGADIGRKKVKKLVVKLKSDKTETDSSYDNVFTNKLKIESNAEQNEAPVVEPEIKQDEPNLELKKLKIVCPICDCVVQNAKALKLHKLEVHKENASVRHKCLTCGEAFPNEYKYTDHLKIHPLECRLCGKLFYRRQNIQLHMKRHLGLKPYKCEICQKSFVTRQKHDEHKNIHTGESPIKCNLCEETFRRHSNLVQHRNRHHFQLKKKVKDYICQCGEIFHSKKKLAWHKEIHDSKPKACTQCSEKFVHMSSLTRHMRRAHNEKFLPQEERGNENVQCPICKGTYLRSSLDVHIRKHSGQRPFTCLICNKDFTTKWNLKLHKWTHASRTSKPFKCDQCKGAFIRESDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCIRHVKEHENNKTFVCQVCGKSFHRSYYLKDHMLVHSGIRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370122;
90% Identity: -
80% Identity: -