Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: pita
Assembly: GCA_963924545.1
Location: OZ004700.1:24351448-24359737[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0062 0.63 12.2 0.5 1 20 191 210 191 213 0.91

2 10 3.4e-06 0.00035 22.5 2.5 1 23 219 241 219 241 0.98

3 10 3.7e-06 0.00038 22.3 0.8 1 23 247 269 247 269 0.96

4 10 0.0013 0.13 14.3 1.5 1 23 275 297 275 297 0.98

5 10 0.00012 0.012 17.6 0.5 1 23 303 325 303 325 0.95

6 10 6.8e-05 0.0069 18.4 2.0 1 23 331 353 331 353 0.98

7 10 0.00016 0.016 17.2 4.8 1 23 359 381 359 381 0.98

8 10 5.4e-05 0.0054 18.7 1.3 1 23 396 418 396 418 0.95

9 10 0.0027 0.27 13.3 0.3 2 23 424 445 423 445 0.97

10 10 8.8e-05 0.0089 18.0 0.8 1 23 451 473 451 473 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0062	0.63	12.2	0.5	1	20	191	210	191	213	0.91
2	10	3.4e-06	0.00035	22.5	2.5	1	23	219	241	219	241	0.98
3	10	3.7e-06	0.00038	22.3	0.8	1	23	247	269	247	269	0.96
4	10	0.0013	0.13	14.3	1.5	1	23	275	297	275	297	0.98
5	10	0.00012	0.012	17.6	0.5	1	23	303	325	303	325	0.95
6	10	6.8e-05	0.0069	18.4	2.0	1	23	331	353	331	353	0.98
7	10	0.00016	0.016	17.2	4.8	1	23	359	381	359	381	0.98
8	10	5.4e-05	0.0054	18.7	1.3	1	23	396	418	396	418	0.95
9	10	0.0027	0.27	13.3	0.3	2	23	424	445	423	445	0.97
10	10	8.8e-05	0.0089	18.0	0.8	1	23	451	473	451	473	0.96

Sequence Information

Coding Sequence: ATGATCTGGAGTAAAATTTGGTCTCTTATCGGCGTAAAATTCAACATCACAGATGTAATTGgagtGTTTAAGAATGATGGAATGCCTCAGCTCATATGTAACTACTGTCGGAAACTTACTTTTCAAGCttacaattttaaaacaaattgtaagaAAGCAGATGACGCTCTTAAACTGTTTCTTGCTACTGGACAATTATCTAAACCTTATATACAAAAAGTGGACGAGATAAGAACACGAGAACAGCAACCTCAAAGAAAAATGAAGATATTAAATGCTAGTGTTCCTGTTCCTACTTCGACTCCCACTGAACAGCCTAAATCCAAGCGAATTAAAATGGAAGATGGTACTGAAATAATCACGTTAAATTTTACGGCTGAAGAGGAACGAAATGAAGTGTCTGTACATCCGGgagaaaatgaaaatgaatcaATTTTGGGATATGAAGAAAATTCGGAACGATGTGATGAagaaaccCTGGTAGATGAAGAAGAAGATAGTTTTTCTGGTTTTGAAGATGATCAATCAATAAATCCTGTTTTAAAAGTGAATCAAGTGAAAACCGACTGTTTTCCTTGCCCACATTGTGACAGAACATTCCCCTTGAAGCAATTGCTTGATTTGCATCTCCCTAATCATGATCGCCAAAGAAGATTTGAATGCGAAGAATGTACGAGGAAATTTTTTACCAAATACGACCTACAGAAACATATTCAAACACATAATGAACAGAAACCATTTGATTGTGTCGTCTGTAACAAATCGTTTTCAAGGGAGTCATTGTTGAGACGCCATGAGAAAATTCATATTGATGTTCCGAAGTATGTATGCAACCAGTGTGATAAGACGTTTTTGACAAAGCAATATTTGGATTCTCACCAGGCAAAGCATAAGAAGAGAAGACCATTCACTTGTCAAGTTTGTAACAAgagttttgtttttaaacagGGTTTGGAACGACATGAAGTTGTTCATAGTGAGAATAAACCCCACAAATGTAACTACTGCGAGGCAAGCTTTACCTCGGCCATAAAATTGACTCGTCACATAACATCCCACGCTGGTTTAAGACCATATCCATGCAAATTATGTGGAAGGACTTTTCTTTTAAGTCATCATTTAACTCGCCACATGCGAAGCCATTATGCTGCACAGTCTTCCTCACCAGAAAGTGCAATAGGCCAACATAAATGCGATATCTGCAGTATGTCATTTAGAAGAAAGGATTCGTTAATTAACCATAGTGCTATACACTCTATGGTGAATTTGAgATGTGTTATTTGTAATACTACTTTTGAAACGGCAAACATGGTTAAAGAGCATATAACTACACATTTAACTGGACTGCCACATCCTTGTGAGAAATGTGATTACAGTTTTGAAACATCCGAACAGTTAGAAGAACATGAACTAAAGCATGCGGAAATGGAATATGAAGAGCAAATTGAGAAAGAGGTAATTTCTGAGGCCCGACAACAACAAGAAGACAATGAAGAATATGAGGAGGGAGAGGTTACAGAATATACCattactgatataaataatCCAGAGGTGATTCCCACATCTAAGCATCGAGAACTTAATGAAAAAGGGCAAAGTGAAGGAAATGTCAATAGATTTGATAGCTTCCTTAAGAATGAAATAGATTCAGATGTGgaagaaaatgaaggtaatgcAACTAATAGTGAGAAATTACCTTCAGTACAGCagcaagaagaagaggaagagCAGCAACTGGATCCTATAAAGCCTATTGTTAGACAAGAAGGAACAAAAGTTTATCAAAGAAAAGCACCCCTTAAAAGAAAAGTGCCACAGATTGTGCGGGAACCCCTTAGAGTTGCACCTCTAGAGCAAATAAATCAATCTGAAACGCAGATTGATACGGTGAATCTTACTTCTGATATAACTGGATTACCTAATAAGAAATTTGTTAACATGAAACTTGGTGATAAGGTGGTTAGGGTTCAAAAGTTCATTGTCACTAAAGAGGAGATGAAGGCCATGGCAAAGCAAGGTATTCTTGAAATGAAAGGTGGCCAAGTTGTTTTGAAAAATCCAGGGCAGCCGATTTTAAATGCTACCCTTAAGCCAATTCAGAAAGTTGACATTGAGTCTCTCTTAGATAAAAAGTCAAGTGCTaaacagcaaataaaaaaataccaggCGCGGTCAGGACTGGAAAGGATAACAGAACAATCTCTGACCTCTGAAAGTAAATCTGAAGAACACAAAAAGTGA
Protein Sequence: MIWSKIWSLIGVKFNITDVIGVFKNDGMPQLICNYCRKLTFQAYNFKTNCKKADDALKLFLATGQLSKPYIQKVDEIRTREQQPQRKMKILNASVPVPTSTPTEQPKSKRIKMEDGTEIITLNFTAEEERNEVSVHPGENENESILGYEENSERCDEETLVDEEEDSFSGFEDDQSINPVLKVNQVKTDCFPCPHCDRTFPLKQLLDLHLPNHDRQRRFECEECTRKFFTKYDLQKHIQTHNEQKPFDCVVCNKSFSRESLLRRHEKIHIDVPKYVCNQCDKTFLTKQYLDSHQAKHKKRRPFTCQVCNKSFVFKQGLERHEVVHSENKPHKCNYCEASFTSAIKLTRHITSHAGLRPYPCKLCGRTFLLSHHLTRHMRSHYAAQSSSPESAIGQHKCDICSMSFRRKDSLINHSAIHSMVNLRCVICNTTFETANMVKEHITTHLTGLPHPCEKCDYSFETSEQLEEHELKHAEMEYEEQIEKEVISEARQQQEDNEEYEEGEVTEYTITDINNPEVIPTSKHRELNEKGQSEGNVNRFDSFLKNEIDSDVEENEGNATNSEKLPSVQQQEEEEEQQLDPIKPIVRQEGTKVYQRKAPLKRKVPQIVREPLRVAPLEQINQSETQIDTVNLTSDITGLPNKKFVNMKLGDKVVRVQKFIVTKEEMKAMAKQGILEMKGGQVVLKNPGQPILNATLKPIQKVDIESLLDKKSSAKQQIKKYQARSGLERITEQSLTSESKSEEHKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00722356; iTF_00110821; iTF_01014934;
90% Identity: -
80% Identity: -