Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004694.1:52768053-52794826[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.012 17.6 3.4 2 23 164 185 163 185 0.98

2 11 3.4e-06 0.00035 22.5 1.2 1 23 191 213 191 213 0.99

3 11 0.00015 0.016 17.3 6.2 1 23 221 243 221 243 0.97

4 11 0.00085 0.086 14.9 1.5 1 23 249 271 249 271 0.98

5 11 0.00061 0.062 15.4 0.6 1 23 283 305 283 305 0.96

6 11 2.9e-06 0.00029 22.7 3.1 1 23 311 333 311 333 0.96

7 11 1.8e-05 0.0019 20.2 0.5 1 23 339 361 339 361 0.99

8 11 1.5e-06 0.00015 23.6 0.6 1 23 367 389 367 389 0.98

9 11 9.8e-05 0.01 17.9 1.5 2 23 396 417 395 417 0.97

10 11 5.6e-05 0.0056 18.6 0.1 1 23 423 445 423 445 0.99

11 11 1e-07 1e-05 27.2 0.5 1 23 451 473 451 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.012	17.6	3.4	2	23	164	185	163	185	0.98
2	11	3.4e-06	0.00035	22.5	1.2	1	23	191	213	191	213	0.99
3	11	0.00015	0.016	17.3	6.2	1	23	221	243	221	243	0.97
4	11	0.00085	0.086	14.9	1.5	1	23	249	271	249	271	0.98
5	11	0.00061	0.062	15.4	0.6	1	23	283	305	283	305	0.96
6	11	2.9e-06	0.00029	22.7	3.1	1	23	311	333	311	333	0.96
7	11	1.8e-05	0.0019	20.2	0.5	1	23	339	361	339	361	0.99
8	11	1.5e-06	0.00015	23.6	0.6	1	23	367	389	367	389	0.98
9	11	9.8e-05	0.01	17.9	1.5	2	23	396	417	395	417	0.97
10	11	5.6e-05	0.0056	18.6	0.1	1	23	423	445	423	445	0.99
11	11	1e-07	1e-05	27.2	0.5	1	23	451	473	451	473	0.98

Sequence Information

Coding Sequence: ATGCGTGATGCGTGTAAACAACTTGTAACTTGCGTTCAGGCAGATTATTGGTTGattgatAATGGAGATGGCTTGCCAAATCTAATATGCTTACAGTGTGTTCATCAAATAAGTAGGTGTTACTCATTTAAACAATTGTGCGAGCAATCGGATATCAATCTCAGACAGTATCTGGGTAAGCCTACTATACTTAAACAGTGTAAAGAAGAGGATACTCATCACAATAATGATTTTTCCACAACATTGCTTCTGGATAACTTTGGCCTTGACTCATCATCAGGTGATAGTGACGATGATGATTTTAAAGATCATTTTTCTCTATTTCAATCCACCATATCAGAAAATCCAAGTGATGAGAAAATTATTGCTCAAAAGCAACTATTGAAAGCGGCAAAATCTCAAAAGAATAAAATgtctagaaaaaaaaattttgcaaaaggTGGAAAAGCTGCAGTATTAGCTGCAAAGAAAATGAAACGTAACGCAAATCAGTGCAATGTATGCAAAAAACAATTCATAAACATGAAATCATTTAGGAAACATCTTAGAACTCATATTGAGGACCGTCcatataaatgtaaattgtgCCCCAGGGGATTTACTGAAGAGAATTATTTGAACAATCACATGCGAACTCATGTTCCCGAGGAACAAAAACCACAtgaatgtaaaatatgtaagaAGAGATTTATACATactacattattgaataaacaCATGTTAAAACACAGTGGGGAGAAACCTTTTGTTTGTAAAATATGCAATAAGGGATGTTATGCCGAAAACAGCCTTCTTAAGCATATGAAGATTCATGAAAAGAAAGAAGGTGATCCAGctttattaaaacatatttgtgATTATTGCAAAACTGAATTTCCTGATGCTCAAAGTTTATCAATTCATATCAAGCAACACACGGGTGACAGACCATTTTTGTGTAACACTTGTGGCAAATGCTTTCCTCAAAGATTTAATCTTGAATTACATCTTCGGACACATACAgGTGAAAGACCATTTCAATGTGAGGTATGTAAAAATGGATATGTCTCAAAAGCTAGTTTAAAAATTCATATGCGAACCCATACTAATGAACGACCATTTGTATGCGACTTCTGTGGAAAAGCTTTTAGGCAGTCTGGCGATTTAACTAGCCATAAACGACTTCATGGTACTGAGAAACCAATAGAATGTTCTGTTTGTCAAAAAAGatttaCCACTGTAATGAAACTTAAATACCACATGCGAAATCACACAGGTGAACgaccatatgtatgtacagtaTGTGGAAGAGGATTTACAGTGAATACAATTTTGCTCAGACATATGAGGGTCCATTCTGGAGAAAGACCTTATGTATGTGTTACATGTGGGAAAGCATTTTCACAGTCCAGCACTTTAAATACACATATGAAAGTGCATGCACCATCTCCGAAATACAATGCTCAAGAGCAGCCACGAATGCCCAAGTTTCACAGTACCAGTGAACAGAAATATCAACCTCAACAAACTCAGCAGGCAGCGGACCACTCAAGTCATCTTATGCAATCCGATAATCGTATGCTTCAGGCTGATCCCATTCAAAGAATGATCCAGTCTGATAATTCTCGAATGTTATCTAGTGATGGGTCTCGCATCCTGACAGATTCATCACAACATTTACTCGCTGATAATAGAGGTATTATTGATAATACAAGGTTATTAACAAATGATGGAACCAGACTTTTGGTAAATGCCAACGAGCCACCTCGTTTGTTAGTAAATGACAGTACGAGAATACTTACAAATGATAACCGTATTTTAACACAGGACAATAGGTTAATAACCAATGTAAATGCAAATGATAATAATAGACTTTTAGCTGACAATTCTAGGTTATTATCCAATGAAAATGCTAGACATTTAGCAGTTATTGAAGGTTCTAGATTGTTGGCGGATAAATATTTGGCCAACTACGACCCCTACCATCGAGGTCATTTGTAA
Protein Sequence: MRDACKQLVTCVQADYWLIDNGDGLPNLICLQCVHQISRCYSFKQLCEQSDINLRQYLGKPTILKQCKEEDTHHNNDFSTTLLLDNFGLDSSSGDSDDDDFKDHFSLFQSTISENPSDEKIIAQKQLLKAAKSQKNKMSRKKNFAKGGKAAVLAAKKMKRNANQCNVCKKQFINMKSFRKHLRTHIEDRPYKCKLCPRGFTEENYLNNHMRTHVPEEQKPHECKICKKRFIHTTLLNKHMLKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKTEFPDAQSLSIHIKQHTGDRPFLCNTCGKCFPQRFNLELHLRTHTGERPFQCEVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECSVCQKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYNAQEQPRMPKFHSTSEQKYQPQQTQQAADHSSHLMQSDNRMLQADPIQRMIQSDNSRMLSSDGSRILTDSSQHLLADNRGIIDNTRLLTNDGTRLLVNANEPPRLLVNDSTRILTNDNRILTQDNRLITNVNANDNNRLLADNSRLLSNENARHLAVIEGSRLLADKYLANYDPYHRGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167794;
90% Identity: iTF_01014864; iTF_00110776; iTF_01290604; iTF_01296714;
80% Identity: -