Aver008690.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Asbolus verrucosus
Gene Symbol
-
Assembly
GCA_004193795.1
Location
QDEB01080752.1:14951-18268[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 6.4e-05 0.0033 17.6 3.4 2 23 200 221 199 221 0.98
2 11 1.9e-06 9.5e-05 22.4 1.2 1 23 227 249 227 249 0.99
3 11 8.4e-05 0.0042 17.2 6.2 1 23 257 279 257 279 0.97
4 11 0.00046 0.023 14.9 1.5 1 23 285 307 285 307 0.98
5 11 0.00021 0.011 15.9 0.6 1 23 319 341 319 341 0.96
6 11 5.9e-08 3e-06 27.1 2.0 1 23 347 369 347 369 0.98
7 11 1e-05 0.00051 20.1 0.5 1 23 375 397 375 397 0.99
8 11 8.2e-07 4.2e-05 23.5 0.6 1 23 403 425 403 425 0.98
9 11 6.7e-05 0.0034 17.5 1.5 2 23 432 453 431 453 0.97
10 11 3e-05 0.0015 18.6 0.1 1 23 459 481 459 481 0.99
11 11 5.6e-08 2.9e-06 27.2 0.5 1 23 487 509 487 509 0.98

Sequence Information

Coding Sequence
ATGGAGGTTAAAATAGAGCCGAGCGTGTTTGATATAAATAAGATATGTAGGGCCTGCCTCACGGAAAAAGGTGAAATGAGGTCTGTGTTCTTGACCGATGAATCCACCGGACATGCTATGATACTTGCAGAAATGATTACTGGAATATCTTCTGTACAGATCGACAGTGGAGACGGTCTACCTTCATTAATTTGCCTCCAATGCGTCCACCAAATCAGCAGAGCCTATTCGTTCAAACAACTCTGTGAACAATCCGACAGCAATCTTCGCCAGTATTTAGGTCTGCCTCCCAGTgtcaaacaaagaaaacaagaagaaGAACAGCATAACAATGACTTCACGACCACATTGCTGCTGGACAACTTCGGACTGGATTCGTCTTCCGGAGACAGCGACGACGACGACTACAAAATCGATTACAATTTACTACAAACCACCTTGAACGAAAACGTCAACGACGAAAAAGCCATCGCTCAGAGACAGCTTCTTAAAGCGGCGAAAGCGCAAAAAGGCAAACTCTCCAAGAAGAAGTTGCTCGCCAAGGCAGGAGGCAAGGCGGCCGttttagcggcgaaaaaactgaaaagaaacaCTAATCAGTGCAACGTGTGCAAGAAGCAGTTCATCAATATGAAGTCTTTCAGGAAGCATTTGAGGACCCACATAGAAGACCGTCCGTATAAATGTAAACTGTGCCCCAGGGGCTTCACCGAAGAGAATTATTTGAACAACCACATGCGCACTCACGTGCCTGAAGACCAGAAACCTCACGAgtgcaaaatctgcaaaaaACGCTTCATCCACACGACCCTACTCAACAAGCACATGCTCAAGCACAGCGGGGAGAAACCTTTCgtttgtaaaatatgcaataaagGGTGCTACGCCGAAAACAGTCTGCTGAAACACATGAAAATCCACGAGAAAAAAGAAGGCGACCCGGCTCTGCTCAAGCACATTTGCGACTACTGCAAGACGGAATTTCCCGACGCCACGAGTCTGTCGGTCCACATTAAACAGCACACCGGAGACAGACCATTCGTGTGCAATATCTGCGGCAAGTGCTTCCCTCAAAGATTTAACCTTGAATTGCACCTGAGAACGCACACTGGTGAGCGTCCCTTCCAGTGCGAGGTTTGCAAAAACGGCTACGTTTCGAAAGCCAGTTTGAAGATCCACATGCGCACACACACGAACGAGCGTCCGTTCGTTTGTGATTTTTGCGGGAAGGCTTTTCGCCAGTCTGGCGACCTGACGAGCCATAAACGGCTGCACGGCACCGAGAAACCGATAGAATGTCAAGTTTGCCAGAAGAGGTTCACAACCGTGATGAAACTCAAGTACCACATGAGGAATCACACTGGTGAGAGGCCGTACGTTTGCACGGTTTGCGGTCGAGGTTTCACCGTCAATACGATCCTGCTGCGGCACATGAGGGTCCATTCCGGCGAGCGACCGTACGTTTGCGTCACTTGCGGCAAAGCGTTTTCGCAGTCGAGCACTCTGAACACGCACATGAAGGTGCACGCGCCCTCGCCCAAATACAACAATCAAGAGAGTCAGCAGAGGATGCCCAAATTCCACAACACCAACGAGCAGAAGTTCCAGAATCAGCACCCGCCGCCCCAGCAGCCGCCCGATCACACGAATCGGATCATGCAGACGGACAATCGCATGATGCAGCCGGAGCCCCAGCGGATGATGCAGCAGGATAATACCCGCATGCTGTCGAACGACGGTTCCAGGATCCTCACCGACAATTCCCATTTGCTCACGACGGATAACAGAGGTTTGATCAATGACAACACGCGTTTGTTGACTAATGATGGTGCGAGGTTGCTGGTCAACATGACGGAACCGCCGAGGCTGTTGGTTCATGACAATTCGAGACTGGTGACGAATGATAATCGATTGTTGACCAACGATGGGAGGCTGCTGACGAATGTCAATGACAATTCGAGACTATTAACGAACGATAATGCGAGACATTTAGCGGTTATAGAAAGCTCTAGGATTTTAGCCGATAAGTATTTAGCCAATTATGATCCATATCATCGAGGACATCTGTAA
Protein Sequence
MEVKIEPSVFDINKICRACLTEKGEMRSVFLTDESTGHAMILAEMITGISSVQIDSGDGLPSLICLQCVHQISRAYSFKQLCEQSDSNLRQYLGLPPSVKQRKQEEEQHNNDFTTTLLLDNFGLDSSSGDSDDDDYKIDYNLLQTTLNENVNDEKAIAQRQLLKAAKAQKGKLSKKKLLAKAGGKAAVLAAKKLKRNTNQCNVCKKQFINMKSFRKHLRTHIEDRPYKCKLCPRGFTEENYLNNHMRTHVPEDQKPHECKICKKRFIHTTLLNKHMLKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKTEFPDATSLSVHIKQHTGDRPFVCNICGKCFPQRFNLELHLRTHTGERPFQCEVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECQVCQKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYNNQESQQRMPKFHNTNEQKFQNQHPPPQQPPDHTNRIMQTDNRMMQPEPQRMMQQDNTRMLSNDGSRILTDNSHLLTTDNRGLINDNTRLLTNDGARLLVNMTEPPRLLVHDNSRLVTNDNRLLTNDGRLLTNVNDNSRLLTNDNARHLAVIESSRILADKYLANYDPYHRGHL