Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004698.1:35892276-35900382[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0077 0.78 11.9 1.0 1 23 148 170 148 170 0.98

2 16 0.029 2.9 10.1 1.5 2 23 176 197 176 197 0.98

3 16 0.0057 0.58 12.3 7.0 1 21 203 223 203 225 0.94

4 16 2.5e-06 0.00026 22.9 3.0 1 23 231 253 231 253 0.98

5 16 0.029 2.9 10.1 1.0 1 23 260 282 260 282 0.96

6 16 0.0041 0.42 12.8 0.5 2 23 289 310 288 310 0.95

7 16 0.0011 0.11 14.5 0.3 1 23 315 338 315 338 0.97

8 16 0.00096 0.097 14.8 1.2 2 23 342 363 341 363 0.97

9 16 6.7e-05 0.0068 18.4 0.8 2 23 370 392 369 392 0.96

10 16 7.5e-05 0.0076 18.2 2.2 2 23 400 421 399 421 0.98

11 16 1e-06 0.0001 24.1 1.8 1 23 425 447 425 447 0.97

12 16 3.5e-07 3.6e-05 25.6 1.6 1 23 453 475 453 475 0.98

13 16 0.0073 0.73 12.0 3.3 1 23 481 503 481 503 0.96

14 16 0.0005 0.051 15.6 2.1 1 23 509 531 509 531 0.98

15 16 3.1e-05 0.0031 19.5 4.0 1 22 537 558 537 561 0.91

16 16 0.0043 0.44 12.7 0.3 1 22 568 589 568 591 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0077	0.78	11.9	1.0	1	23	148	170	148	170	0.98
2	16	0.029	2.9	10.1	1.5	2	23	176	197	176	197	0.98
3	16	0.0057	0.58	12.3	7.0	1	21	203	223	203	225	0.94
4	16	2.5e-06	0.00026	22.9	3.0	1	23	231	253	231	253	0.98
5	16	0.029	2.9	10.1	1.0	1	23	260	282	260	282	0.96
6	16	0.0041	0.42	12.8	0.5	2	23	289	310	288	310	0.95
7	16	0.0011	0.11	14.5	0.3	1	23	315	338	315	338	0.97
8	16	0.00096	0.097	14.8	1.2	2	23	342	363	341	363	0.97
9	16	6.7e-05	0.0068	18.4	0.8	2	23	370	392	369	392	0.96
10	16	7.5e-05	0.0076	18.2	2.2	2	23	400	421	399	421	0.98
11	16	1e-06	0.0001	24.1	1.8	1	23	425	447	425	447	0.97
12	16	3.5e-07	3.6e-05	25.6	1.6	1	23	453	475	453	475	0.98
13	16	0.0073	0.73	12.0	3.3	1	23	481	503	481	503	0.96
14	16	0.0005	0.051	15.6	2.1	1	23	509	531	509	531	0.98
15	16	3.1e-05	0.0031	19.5	4.0	1	22	537	558	537	561	0.91
16	16	0.0043	0.44	12.7	0.3	1	22	568	589	568	591	0.87

Sequence Information

Coding Sequence: ATGGCCCAGGAAGCAATTCCAAAAAGGGAGGTACTTTACGTTAAAATGGAAATTGATGGCTTGAAACTGGTAAAAACTGAGCGTGATTATAAACAAGAATCTGATTTAAGGGAAAAGGTGATTTCTGTAAAAAACGAGGTTAAAAATGAGGCAATAAACAGCTGTCAAAATTTGTCTCCCATGAAAACAGAAAATGAGTTTATtaatagttttgaaaaaaaaacagaactTCATACTAATATTCATGAGCAAAACATGAAACCTAAAATAATTCAGGAAAATGAATTAGAAAAGTTGTTGGTAAAAGAAGAAGTAGAGAATGATTATGatgaaaattttgaattgtCTCAGTCAGATATTGAAAAGGAGTTTGAAGCATTTAATAATGAAGACGAAAAGACTAATAGTGGGAAAACTACCCTAGAaaacaacaccactgcttataAATGTCAAATGTGTGAGGAAATTTTCATCAAGTTTCCTGAATATAAAGCTCATAAGAAGTcgcattttatagaaaaacgcagGTGCCCGAAGTGTAACATAGTATGCCAAAGTATTGGCAAACTACAGGACCATTTGAACAAGCATTTGGGTTTAAAACCCTTCAACTGTGATGAATGTGGTAAATCATTCATTTCTAAGCATcatgtaaaattacataaaagatgtcacaataaagaaaaatcacataaatgtacaaaatgtgATAAAGCATTTAGAAATAGGGGTTCACTGAGAAGCCACCAACTTGTACATCAAGAAAAAATTAGAGAATTTATATGTaagATATGTAGTGAAGACTGCCAAAATCTTCCGGATTTTAGAAAACATATGGAAGGACATggaaaaaaatctgaaattaaatgTGGTCTTtgcaataaaacatttaatagtGACCGTGGATTGGAATATCATATTAGTTTTCATAAAGAACTACAATTCCCTTGTGAGTACTGTGGACGAATATATCCATCAATGTATAGGATAAAAAGGCATATAAAAAGGGCGCACATCCCAAATCAGTGTGAAGAATGCAAAGAGatattttatgatCGTGCTCTATTCACAAAACACAGAAAACAGCACAATGAAGGTAAACCTGTGGAGTGCCAATATTGTCAGAAAAAATTTGATAAAGCAAAAAATTTAAGTGAGCACATTAGGTTGCAACATAAGCAGGATGGTACCAAGAAGAAGTGTCACATTTGTGAAAAGGAATTTATTAATACAGCTCTCTTAAAGAATCATGTCAAAACCCACGACAAGTGTTTTAAATGCCCTCACTGTGATAAGGTATTTGCTTCCAGgtataaTCTTGAAACACATTCCGTAACCCATTCTGGTGCAAGAGACCATAAATGCCCACTGTGTGGAAAAGGTTATTCAACAAAAAGTAGCTTAAAGAATCATCTTGCCACACATAGTGAAGAGAGATCATTCCAGTGTGATCAATGTGCAAAAACTTTCAAAACTAACCGTAGACTATATGTTCATAAATTTTCTCATGCAACAGAGGAAAAGTTCCAGTGTGAAATTTGCTTGCAAAAATTCAGAGTGAAACAGTACCTGAAATATCATATGATAAAACATTCTACTGTTAAACCTTTTGAATGTGAAATATGCAAGAAGAGattcaaacacaaaaaatcatatgaaaAACATATGAATCTGGGTAGACACAAAAAGACCGAAGCCGAGCATGACTGCGATTTCTGTGATGAGAGTTTTGCTACTCGAGATTTACTTGTGGATCACTTTGCCGAAGTGCATcacaaggaaaatattataaataatataaatgaatgTGAGGGTATGGCTGAAGAAAATAGTACAGAGGAAATTATGAATGAAGAGGACAGTACTGTGAAAATTAAGGTAGAAAAAAGTGATAATGTAGGTGGAAAGGTGCAGGTAAAGGATGAGCCTTCTGATgtctaa
Protein Sequence: MAQEAIPKREVLYVKMEIDGLKLVKTERDYKQESDLREKVISVKNEVKNEAINSCQNLSPMKTENEFINSFEKKTELHTNIHEQNMKPKIIQENELEKLLVKEEVENDYDENFELSQSDIEKEFEAFNNEDEKTNSGKTTLENNTTAYKCQMCEEIFIKFPEYKAHKKSHFIEKRRCPKCNIVCQSIGKLQDHLNKHLGLKPFNCDECGKSFISKHHVKLHKRCHNKEKSHKCTKCDKAFRNRGSLRSHQLVHQEKIREFICKICSEDCQNLPDFRKHMEGHGKKSEIKCGLCNKTFNSDRGLEYHISFHKELQFPCEYCGRIYPSMYRIKRHIKRAHIPNQCEECKEIFYDRALFTKHRKQHNEGKPVECQYCQKKFDKAKNLSEHIRLQHKQDGTKKKCHICEKEFINTALLKNHVKTHDKCFKCPHCDKVFASRYNLETHSVTHSGARDHKCPLCGKGYSTKSSLKNHLATHSEERSFQCDQCAKTFKTNRRLYVHKFSHATEEKFQCEICLQKFRVKQYLKYHMIKHSTVKPFECEICKKRFKHKKSYEKHMNLGRHKKTEAEHDCDFCDESFATRDLLVDHFAEVHHKENIINNINECEGMAEENSTEEIMNEEDSTVKIKVEKSDNVGGKVQVKDEPSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110771;
90% Identity: -
80% Identity: -