Basic Information

Insect: Anoplophora glabripennis
Gene Symbol: -
Assembly: GCA_000390285.2
Location: NW:389605-397696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0031 0.095 12.9 0.9 1 23 142 164 142 164 0.98

2 16 0.024 0.73 10.1 1.5 2 23 170 191 170 191 0.98

3 16 0.0048 0.15 12.3 7.0 1 21 197 217 197 219 0.94

4 16 3.1e-07 9.5e-06 25.5 1.5 1 23 225 247 225 247 0.98

5 16 0.024 0.74 10.1 1.0 1 23 254 276 254 276 0.96

6 16 0.0034 0.11 12.8 0.5 2 23 283 304 282 304 0.95

7 16 0.00094 0.029 14.5 0.3 1 23 309 332 309 332 0.97

8 16 0.00036 0.011 15.9 1.1 2 23 336 357 336 357 0.96

9 16 5.6e-05 0.0017 18.4 0.8 2 23 364 386 363 386 0.96

10 16 6.2e-05 0.0019 18.3 2.2 2 23 394 415 393 415 0.98

11 16 8.4e-07 2.6e-05 24.1 1.8 1 23 419 441 419 441 0.97

12 16 4.5e-07 1.4e-05 25.0 2.1 1 23 447 469 447 469 0.98

13 16 0.006 0.19 12.0 3.3 1 23 475 497 475 497 0.96

14 16 0.00042 0.013 15.7 2.1 1 23 503 525 503 525 0.98

15 16 2.5e-05 0.00078 19.5 4.4 1 22 531 552 531 555 0.92

16 16 0.0042 0.13 12.5 0.3 1 22 562 583 562 585 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0031	0.095	12.9	0.9	1	23	142	164	142	164	0.98
2	16	0.024	0.73	10.1	1.5	2	23	170	191	170	191	0.98
3	16	0.0048	0.15	12.3	7.0	1	21	197	217	197	219	0.94
4	16	3.1e-07	9.5e-06	25.5	1.5	1	23	225	247	225	247	0.98
5	16	0.024	0.74	10.1	1.0	1	23	254	276	254	276	0.96
6	16	0.0034	0.11	12.8	0.5	2	23	283	304	282	304	0.95
7	16	0.00094	0.029	14.5	0.3	1	23	309	332	309	332	0.97
8	16	0.00036	0.011	15.9	1.1	2	23	336	357	336	357	0.96
9	16	5.6e-05	0.0017	18.4	0.8	2	23	364	386	363	386	0.96
10	16	6.2e-05	0.0019	18.3	2.2	2	23	394	415	393	415	0.98
11	16	8.4e-07	2.6e-05	24.1	1.8	1	23	419	441	419	441	0.97
12	16	4.5e-07	1.4e-05	25.0	2.1	1	23	447	469	447	469	0.98
13	16	0.006	0.19	12.0	3.3	1	23	475	497	475	497	0.96
14	16	0.00042	0.013	15.7	2.1	1	23	503	525	503	525	0.98
15	16	2.5e-05	0.00078	19.5	4.4	1	22	531	552	531	555	0.92
16	16	0.0042	0.13	12.5	0.3	1	22	562	583	562	585	0.87

Sequence Information

Coding Sequence: ATGGCCCAGGAAGGAAATTCAAATTCGGAcgtattttatgttaaaatggaAGCTGACAGTATGAAACCTGTGAAAACAGAGCCtgcttataaaattaaactagaGAGTGATATAacagacaaaattaatttgaaaggaGAACTTAAGAATGAGCCAGGAGACAGCTGCCAAAATTCATCTCCTGCAGAttctgaaatgaaatttaatagaAGTTGTGAAACAAATAGTGTAAATCATGAAAAAATAGACTCTAGCGAAGTCaatgaaatagaaaaattattagtgaaAGAGGAAGTAGAGAATGATTATGACGAAAATTTCGAATTATCTCAATCAGATATTGAAAAAGAGTTTGAAGCATTTAATAATGAAGATGAAAAGACTAATAGTGGGAAAACTACTTTAGAAAACAATACCACTGCTTATAAATGTCAAATGTGcgatgaaatttttataaaatttcctgACTATAAAGCCCATAAGAAGTTGCATTTTATAGAGAAACGCAGaTGCCCAAAGTGTAATATAGTTTGTCAAAGTATTGGTAAGCTACAGGACCATCTAAACAAACATTTAGGTTTGAAACCGTTTAACTGTGATGAATGTGGTAAATCGTTTATTTCAAAACatcatgtaaaattacataaaagatgtcataataaagaaaaatcgtataaatgtacaaaatgtGATAAAGCATTTAGAAACAGAGGTTCGTTAAGAAGCCACCAACTTGTGCaccaagaaaaaattaaagaattcaTTTGTAAGatatgtagtGAAGATTGCCAAAACCTTCCAGACTTTAGGAAACACATGGAAGGACATGGTAAAAAATCCGAGATCAAATGTGGActttgtaataaaacatttaatagcgATCGAGGATTGGAATACCATATTAGTTTTCACAAAGAACTGAAATTTCCTTGTGAGTACTGCGGAAGAATATATCCGTCAATGTATAGGATAAAACGACATATAAAGAGGGCCCACATTCCAAATGAATGTGATGAATGTAAAGAGGTTTTTTACGATCGAGCGCAGTTcacaaaacacaaaaaacaACACAATGAAGGCAAGCCTGTGGAATGCCAGTATTGTCAGAAAAAGTTTgacaaagcaaaaaatttaagtgAACACATCAGGTTGCAACACAAGCAAGATGGAACTAAAAAGAAGTGCCACATTTGTGAAAAAGAATTCATTAACACAGCTCTCTTGAAAAACCATGTCAAAACCCATGACAAGTGCTTTAAATGCCCTCATTGTGATAAAGTATTTGCTTCCAGaTATAATCTCGAAACACATTCCGTAACACATTCTGGAGCAAGGGACCATAAATGCAACCTTTGTGGGAAAGGTTATTCGACAAAGAGTagcttaaaaaatcatattgcCACCCATAGTGAAGAAAGATCATTCCAATGTGACCAGTGTGCGAAAACTTTCAAAACGAATCGTAGACTCTACGTTCATAAATTTTCTCATGCAACAGAAGAAAAGTTCCAATGTGAAATTTGCCTGCAAAAATTCAGAGTTAAACAGTACCTGAAGTACCATATGATAAAGCATTCTACTGTGAAACCGTATGAATGTGAGATATGCAAAAAGAGATTCAAACACAAAAAGTCTTATGAAAAACATATGAATCAGGGTAAACACAAAAAAACCGAAGTCGAACACGACTGCGATTTCTGTGATGAAAGCTTTCCCACTCGAGATCTACTTGTCGACCATTTTGCCGAAGTACATCACCAGgagaatattattaataatataagtGAGTGTGTAGGTATGGCTGATGAAAATGATGTGGAAGATGTTACGAATGAAGAGGAAAGTGATGTCAAAATTAAGGTAGAAAAAAGTGGTAACGTCGATGGGAAGGTTCAAGTTAAAAATGAGCCAGTGGATGTCTAA
Protein Sequence: MAQEGNSNSDVFYVKMEADSMKPVKTEPAYKIKLESDITDKINLKGELKNEPGDSCQNSSPADSEMKFNRSCETNSVNHEKIDSSEVNEIEKLLVKEEVENDYDENFELSQSDIEKEFEAFNNEDEKTNSGKTTLENNTTAYKCQMCDEIFIKFPDYKAHKKLHFIEKRRCPKCNIVCQSIGKLQDHLNKHLGLKPFNCDECGKSFISKHHVKLHKRCHNKEKSYKCTKCDKAFRNRGSLRSHQLVHQEKIKEFICKICSEDCQNLPDFRKHMEGHGKKSEIKCGLCNKTFNSDRGLEYHISFHKELKFPCEYCGRIYPSMYRIKRHIKRAHIPNECDECKEVFYDRAQFTKHKKQHNEGKPVECQYCQKKFDKAKNLSEHIRLQHKQDGTKKKCHICEKEFINTALLKNHVKTHDKCFKCPHCDKVFASRYNLETHSVTHSGARDHKCNLCGKGYSTKSSLKNHIATHSEERSFQCDQCAKTFKTNRRLYVHKFSHATEEKFQCEICLQKFRVKQYLKYHMIKHSTVKPYECEICKKRFKHKKSYEKHMNQGKHKKTEVEHDCDFCDESFPTRDLLVDHFAEVHHQENIINNISECVGMADENDVEDVTNEEESDVKIKVEKSGNVDGKVQVKNEPVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014854; iTF_01227561;
90% Identity: iTF_01014854;
80% Identity: -