Phis001694.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- foxf1-b_1
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:31817113-31818180[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-39 6.6e-36 123.9 0.0 1 87 82 167 82 168 0.97
Sequence Information
- Coding Sequence
- ATGATGAAGGAGCAACAGTTGTCTGAAGTTAGCGCGTCCAGCCAGCTGACTCCAGTCGTGCACCAGAACATCAACATCCAGCAGCACCTCCATCAGCTTCACCTGCACCAAAACCACACCAGCGTTATTTTACCCAATGAGCAACCCCAGACGGCTTCGCAACATGTTTCGCCGGAAAGCACAGCCCAGGACCCCGACACAAAACCCTCCAGTTCCGACAAGAAATCCGGTGTTCGTCGACAGGAAAAACCGCCCTATTCCTACATCGCTTTGATAGTCATGGCTATCCAACATTCTCCCACGAAAAGACTAACGCTTAGTGAGATATACACGTTCCTCCAGCAGAGGTTCCCGTTTTTCCGCGGTTCGTACCAAGGATGGAAAAACTCAGTGCGGCACAATTTATCTTTAAACGAATGTTTTATAAAACTACCTAAAGGGTTGGGACGCCCCGGCAAAGGACATTACTGGACGATCGACCCAGCCAGTGAATTCATGTTTGAAGAAGGATCGTTCAGAAGAAGGCCGAGAGGTTTCCGAAGAAAATGTCAAGCGATGAAGCCCCAGTATCATCCAGGCACGTTTTTTGCAAATAATATGGCAGGTATGGTAAACCAAGCGTCAGGTTATGACCACCAAGCCCTCATGCAACCCCAAGAGTACTCGACTTGTTCTTACAATACACCTTCACCTCAAGTGACACCAGTGTCTGCATCGCATTATTCGAATTATGATTACCCAGCAGTCTACCAGCAACAGTGTGATAGAGATTGGAGCTCCCCGTCAGCGCTGTTACCATCTTACCCTGATAGTTCGATATCGAGCACTTACCTGAAAGCACCTCTGAGTCCGATGCCGGACAATCAAGATACGCCACCGCCTGCGATGACCGATAACTTCTATCAGTACGGAGCCATTTCCACCTCATCCGCAGACAATTGTAAGTTTTTCTTTTGCTTTTTTTGTAACTGGCGCTTACTAACATTCGAAGATGTTGATTTAGTAACAGGAGCTGGCCGTTTTACATGGCAGATGACACGCCGTTTGACATCGCTGGCAGGCACATAA
- Protein Sequence
- MMKEQQLSEVSASSQLTPVVHQNINIQQHLHQLHLHQNHTSVILPNEQPQTASQHVSPESTAQDPDTKPSSSDKKSGVRRQEKPPYSYIALIVMAIQHSPTKRLTLSEIYTFLQQRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRRPRGFRRKCQAMKPQYHPGTFFANNMAGMVNQASGYDHQALMQPQEYSTCSYNTPSPQVTPVSASHYSNYDYPAVYQQQCDRDWSSPSALLPSYPDSSISSTYLKAPLSPMPDNQDTPPPAMTDNFYQYGAISTSSADNCKFFFCFFCNWRLLTFEDVDLVTGAGRFTWQMTRRLTSLAGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852489; iTF_01014058; iTF_00110349; iTF_00721812; iTF_00327667; iTF_00328964; iTF_00392565; iTF_01479932; iTF_00752756; iTF_00414868; iTF_01277493; iTF_01289559; iTF_00165869; iTF_01295790; iTF_00885711; iTF_01310133; iTF_01368830; iTF_00395064; iTF_01535641; iTF_01480666; iTF_00387868;
- 90% Identity
- iTF_00721812;
- 80% Identity
- -