Phis013805.2
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- retn
- Assembly
- GCA_963924545.1
- Location
- OZ004693.1:95562776-95581126[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-20 2.3e-16 61.5 0.0 16 89 33 104 25 104 0.94 2 2 4.5 2.8e+04 -2.8 0.0 25 38 243 256 203 258 0.58
Sequence Information
- Coding Sequence
- ATGCCGCCTCCAAGACATTCTTCTGTGAGCTCCAACCGTCGTTGCACCAGACTGAAGAAGGACAAAAACTCATTTCCTAATCGACATCGTTTTGTTTCAGGAACGCCAATCAACAGACTGCCCATAATGGCGAAGTCGGTGCTCGATCTCTACGAACTGTACAACCTGGTGATAGCGAGGGGAGGCTTGGTAGacgttataaataaaaaattgtggcAGGAAATAATTAAAGGACTGCACTTGCCCTCGTCGATCACATCTGCCGCTTTTACTCTCCGGACACAATATATGAAATACCTGTACCCCTACGAATGCGAGAAGCGGCGACTGAGCACACCGGCCGAGCTTCAAGCCGCCATAGACGGCAACCGCCGGGAGGGTAGGAGGAGCAGCTACGGCCAGTACGACTCTATGCAGCGGTCGCCCAACCCCGGCCTGCAGATGTCGTCGCTGTCGCTGGTGTCGCAGCAACAGCAGCAGCAGTTGGCGGCGCGTATGATGGGTACCGCAGGGATGAACCTCCACAACGGCGCCCACCATCCTAGCCACCCCCAGCCCCTGGGTCAACCCATCAACGGGGGGCCGCTACCCGGCCTGGCCCCCAGCGAGTTCGAGGCGCGCATGATGGAGTACGTCAAGCTGCTCAACAAGGAAATCAGAAGTTCTGCCGCCACGCCACCCAGCCAGGGCAACATGTCGCCGCCCAGCACTACGTCCCCCCTCAATCACCTGGAGATGTCGCGGATGACCTTGTGGAACCTCTACAACAACAACCAGCCTCCAGTGGAGCCCCAAAAGGAGCCCATGAACCTCTCCGAACCGTCGGCGACCGTGAAGCGGGAGCCGGATTGCAGGGAATCGTCACCACCCGCAAAGAGGTTGACTAAAGAGGATGAGGAGGTACACCCAATCAAAGAGCACTCGATGGCACCTCCTGCAACGCATATTAAGATCAACAGTAGAGgGGATTCCCGTAACGGCGACAACTCCTTAGTGGTAAGTTTGGAGCTCAACGGGGTGACCTACCAGGGAGTCCTCTTCGCCCAGAACTCTGCCCCTAGCAACCGGACGGCCCTGACGTCTTAA
- Protein Sequence
- MPPPRHSSVSSNRRCTRLKKDKNSFPNRHRFVSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPGLQMSSLSLVSQQQQQQLAARMMGTAGMNLHNGAHHPSHPQPLGQPINGGPLPGLAPSEFEARMMEYVKLLNKEIRSSAATPPSQGNMSPPSTTSPLNHLEMSRMTLWNLYNNNQPPVEPQKEPMNLSEPSATVKREPDCRESSPPAKRLTKEDEEVHPIKEHSMAPPATHIKINSRGDSRNGDNSLVVSLELNGVTYQGVLFAQNSAPSNRTALTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791865;
- 90% Identity
- -
- 80% Identity
- -