Pcup039887.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- Trl
- Assembly
- GCA_963942605.1
- Location
- OZ012725.1:10549082-10550547[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-16 1.2e-11 46.1 0.5 10 44 281 315 276 319 0.95
Sequence Information
- Coding Sequence
- atgACTACAAATCAGCTGTACAGTTTAACTTGGGGAGATTTTGGAACATCTTTAGTATCTGCTGTGCAGTTGCTAAGATGTCATGGTGATTTAGTAGATGTTACTTTAGCTGCTGGAGGTAGATGTTTCCCAGCACATAAAATAGTTCTCTGTGCTGCTAGTCCTTTCCTTCTCGATCTTTTAAAGAGTACACCATGTAAGCACCCAGTCGTAATGTTAGCTGGAGTAACCGCTTCGGATTTAGAAGCATTGCTGGAATTCGTATATCGAGGAGAAGTCAGCATTGATCCTAACCAGCTGCCATCGTTGTTGCAAGCTGCTCATTGTTTAAATATCCAGGGTTTAGCACCTGCTACTACAAATGAAACACACCATCAAAATACTCTACATCATACAATAAAAGCAGTCATTGATATAGCAAAAAATGACGATATTACTCAGACAAATGCAGCAACACATGAAGCATTGTCTAGAGATGTTATTAACTCTTTTCTGCCTCTAAGGCGACGTAAGCGTATTAAAAGGAAAGCTTCAAATAGCGGAAGAGCTAAATGGCCACGACAGGATATTGCGGAAAATACAGAAAATCGACCAGTTGAGCAACAAAGTGTGACTGTTAACGAACATGGCGAAGTTTTAAGTATGTCTGGCGTTCATCGCAAAACTGTACAAAGCAATACAACTGCTAGCGACACATCGACTGAAGTATGGAACGAATCTGATCTAAACTTTACAAATGTTTCAACCGCGGGTACAATAACAACTCCAGAACAATTAATGGTAAACACGGCTCATATTCCAACCCACAATATCACCCAAGTCTCAGCCTCAACAAATACAACAGGAACATCAACTCCTAAAGTCCGCAGTGCTTCCGATCAACCAGGCGCTTGCCCTCTCTGCGGGGCGATGTTGCGACAAGCGAGAAATCTACGACGGCATTTATTGACCAGTTGCAAATACAGAGACACCGGAGAAGCTTTACAAGCTTCTGCCGCAACTGCTACTGTCCAGACTGAGCACAGAACTATTCAACATTCGCGGGAACCAGAACTGCATCAACTGCAACCGGTTGCAATGCAAACTGTTGAGAGAGTTGCTCCGAGTTCTGCAGCGCATCTGGAAAATAAGACTTCGGTACTCACGCATATTTCTTGTAGTAATATGATTGTCACGGATTgtTATGGATTTGGACAACGAAAATTTGGATTTGGTTTAGATTTGGAAAAGCCGTAA
- Protein Sequence
- MTTNQLYSLTWGDFGTSLVSAVQLLRCHGDLVDVTLAAGGRCFPAHKIVLCAASPFLLDLLKSTPCKHPVVMLAGVTASDLEALLEFVYRGEVSIDPNQLPSLLQAAHCLNIQGLAPATTNETHHQNTLHHTIKAVIDIAKNDDITQTNAATHEALSRDVINSFLPLRRRKRIKRKASNSGRAKWPRQDIAENTENRPVEQQSVTVNEHGEVLSMSGVHRKTVQSNTTASDTSTEVWNESDLNFTNVSTAGTITTPEQLMVNTAHIPTHNITQVSASTNTTGTSTPKVRSASDQPGACPLCGAMLRQARNLRRHLLTSCKYRDTGEALQASAATATVQTEHRTIQHSREPELHQLQPVAMQTVERVAPSSAAHLENKTSVLTHISCSNMIVTDCYGFGQRKFGFGLDLEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769305;
- 90% Identity
- iTF_01225960; iTF_00029867; iTF_00029449; iTF_01105239; iTF_01104873; iTF_00769305; iTF_00768921; iTF_00470522; iTF_00470090; iTF_01275518; iTF_01275939;
- 80% Identity
- iTF_01225960;