Pcup012477.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
L
Assembly
GCA_963942605.1
Location
OZ012715.1:16965329-16975403[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2e-05 0.0038 19.2 1.1 1 23 62 84 62 84 0.98
2 22 0.25 48 6.2 5.9 1 23 90 112 90 112 0.98
3 22 1.3e-06 0.00024 22.9 4.3 1 23 118 140 118 140 0.99
4 22 2.1e-05 0.0041 19.1 0.2 1 23 146 168 146 168 0.98
5 22 0.0008 0.15 14.1 3.2 1 23 203 226 203 226 0.96
6 22 3.5 6.7e+02 2.6 0.1 9 23 266 281 261 281 0.93
7 22 0.048 9.1 8.5 0.4 1 19 327 345 327 350 0.91
8 22 0.54 1e+02 5.2 0.1 2 23 371 393 370 393 0.94
9 22 0.084 16 7.7 0.2 3 23 462 482 461 482 0.98
10 22 0.17 33 6.8 3.9 2 23 516 537 515 537 0.84
11 22 0.49 94 5.3 1.0 3 23 547 568 545 568 0.91
12 22 0.0093 1.8 10.8 0.7 1 23 573 596 573 596 0.96
13 22 1.4 2.7e+02 3.9 1.3 1 23 603 627 603 627 0.96
14 22 0.0017 0.32 13.1 0.4 1 23 669 692 669 692 0.98
15 22 3.1 5.8e+02 2.8 0.6 3 23 757 779 756 780 0.85
16 22 0.0023 0.44 12.6 4.6 2 23 793 814 792 814 0.96
17 22 0.0028 0.53 12.4 0.5 1 23 824 846 824 846 0.98
18 22 0.00017 0.033 16.2 0.9 1 23 964 987 964 987 0.96
19 22 0.0032 0.6 12.2 0.7 1 23 991 1013 991 1013 0.99
20 22 0.0042 0.8 11.8 2.0 1 23 1022 1044 1022 1044 0.96
21 22 0.011 2 10.6 0.1 1 23 1052 1074 1052 1074 0.97
22 22 0.071 14 8.0 1.0 1 23 1081 1103 1081 1103 0.94

Sequence Information

Coding Sequence
ATGCCAGGATGCCCCGTTACGTCAAAAACGCTGGGTACCGACCAAGGCAGCAGCTCGCGCTCCGAAACCCCGGAGGATCCACAAACCTCTCCGACGCCGTCTTCGTGCGCGACTCCAAACTCCACCACGGATCTACCAGACGCGGAACTTAGCTTCACCGTCGGTATTACGGAGACCACGCCGTATGCTTGTCAGTTCTGCGACAAGGCGTTTCCTAGGCTTAGCTTCCTCAAGAAACATGAACAGACCCATGGAGATCATATGCCGTTTCGGTGCGAATTTTGTTCGAGGTTGTTCAAACACAAGAGATCACGTGACCGCCACATAAAACTTCACACGGGGGACAAGAAATATAGGTGTACTCATTGTGAAGCCGCCTTTTCCAGGAGTGACCACTTGAAAATTCATATGAAAACGCACGACACCCAGAAACCATTTCAATGTACGGTGTGCAACCGAGGCTACAATACTGCAGCTGCTTTGACTTCTCATATGCAGAATCATAAAAGACAGCGACCAGAAACGCCTGCAAGTACTGCTTGTGCCACCAATAGCGCCAAAACTCCTGTAACTGTTAGCGAGGAAAGTGTCTCCAGTCCGGATAGTTACCATTGTTCGCAGTGCGGGGATATGTTCAAGAAACAAGATCACTTGCAgACTCACATACTGAATGCGCATGGTTCAAATTTGCTTTCGCCAGAAGAATCAGCTCACAAGAACGTTTCTCTCGTAATTCCGGATCAAATATTACCGCAGTTAACTCCCAAACTAGCTTGTATATACTGTACAAAGGATAGTTTTACCACCATGGAGCAACTTCAAATTCATGTGCAATCTATGCATAGTTCTATTCTTAACGGCGATCTTCGTGAGTTTTCCCGAGGAGCCCAAATGCCAAGGTCGACTCCTCTTAATTTAATGACACCACCGCCCCCTCTAATACCAGTTAATGGTCATTTGCCACCTTCTTCTTTGTTATATCCATGCGATATGTGTACTATGAGATTCCCCACGATTCATCGACTACGAAAACATTCTGTAGCCGTCCATGGACACTGTGACTTTACGCGACAGAAAGAGATAAGTGATACTGTGCACCAAAGTCCACTTGTGTGTGTCCAATGCGCCTTACCTTTTCATACGTCCGCAGCTTTTACCGAACACTACTTAATGGTTCATGGTGGAAGTAGCCCCTCTCTATCTGCTGTTTCCCCAATCCCAGAACAAGTGAAACCAACAGATCTTAGCAGAAAGAATCGAAGATCAAGTTCAGTAGACAGGAAGTCGAAAAGAATGTGTGTTAAGGAAGATGGTTCGTCGAGGTTAGATTTGATGACTCCAAATGCAGGAACTGCACAATATGAGTATCCTAGCATGTTGTTGTGTAACCAGTGCGATGCGGCACTACCAGATTTTGAGTCTTTTAGAAATCACCTCAAATCACATTTGGAACAAACTGGAGGAATTAGATCATTCTTACATACTAGTGGCTCCACTATATTGGATACTTTTcaacaagaaaatttaaaagtacaaaataattgtatttgtcCTCACTGTGGAACAACTTTCAAAGATCTTGTTTCTTGTGAGCAGCACGTTTATGCTCATTTCTTGAAAACTGCTGTTGAATTTGGTTGTCAAAGTTGTCTAACAATGTTTCCAACGACTGATGATTTACACAAGCACTTGTTTGAAATTCATACGCATCATCTTTTTAGATGTTCTGTATGCAAAGAAATGTTCGATTCCAAGGTAgctattaaaatacattttaacatgAAACACAGCACTGAATGTAAAGTCTTTCGATGTTCAACTTGTCCTAATTTAATGTTTCATACAGAATTAGAATTTACTGTTCATGTTCGTACTGTACATGGTGCTCATACATTGTTGTCAGCGCTTCAGTCGCATTCCAAGACGCTTCGATGCATGTTTTGCCGTCAAGTATTTGGTTCAGACTTGGAAATGCAATTTCATTTGGCCACTCATACGAAGCAGTTTCGTTGTCCGATTTGTTCGGAGAGTTTCCAGATTGAATTTCTTCTGGATCGGCACATACAGACATACCACAGTAATACACGAAATATCAATGGTGAAAACGACGACAGCATCGATGGAGAAAAGCCCATAAAGAAATCTTCGTCCAGTTCTCCACATCAAATTGGAAAAACACACTCATCACCTGGAAGAACATCCCAGAAATCGTCTTCAGGTGAAAATAACAACGTGAAGAAACAACATGAAGTGTCTCAATTAAACAACTGTGATATATGTGAACGTAATGATTTTAGTAATGAAACCGAGTTAGTGGCTCACCGAAAATTAGTTCACCATGCGAGAAATAACACTAAGAATGGAGTAGTTAGTCTACATTGTGCGTATTGTAACGAAAATTGTAAAACCCGTACTGAACTTGAAAATCATATGAAAAGTCATTCGCAAAGTAGTGGAGTTTCAGGCAAacacaaatgtaatatttgtgaTGAAATCTGTCCGTCGGCTGTCTTGCTAGCAGAGCACAAATTGACACATTGTAAAGTTATATCAGGCAACTGTTGTACTCAGTGTAAATCAAATCTAACTAATGAAGAACAATTTTATTCTCATTTAGTTCAACatagcaacaacaacaacaatggCAACCAAAAGTCCAAATCGCAAGTTGCGTTACCTACCCCATGCGTAATTtgccgtcaaactttaatttctgaCGTGGAAGTTCGAATTCATGCGCAGTTTCACTTACGTAATACCATGCAACAAGCAGAATTTCAATgttcaatttgttttaaaatagttgATGTGCAAAATGTGATTATTACAAACGGCAGTTACATGTGCTCCGAATGTTATTCTTCGCCAAATGACTCTCAGCAACGTAATTTTCACTGCAATGAGTGCCAGTTTTCCTTTGACACCAGTGTAGCTTTGGAACAACACATGGATTCTGTACACAGCAAGACGTACACTTGTACTAAATGTGAAGCTGTTTTTGACACTGAAAGGGATGTACATATCCATATCTCAACGCATTTAATGGCAGAAGGAGGCAATAACCATGAATGTCATTTATGTCGAAGGTTATTCTCCAGTCCGATGAAACTTCAAGCGCATTTAATAGAACACACTTTTGCTGGTTGTGGTGGATTCACTTGCTATTTGTGTTCAGCTGTATTTACAGGTGCACAAGGACTTCAGACTCATATTATTGAACATGGTTTAGCTGCAAGACCTTACGATTGTCCTCAGTGTAATCTGAAATTCTTTTTCAGAGCTGAACTAGACAACCATAGCTACAGCCATTTAGGTCGTAGTTCAAGAACTCCAGTAGAACTTGATGTTGCTTTAATGAGTCCTAAAGCTTATTATGTATCTGTTAATGGAAAATATGATCCTTCCAAGAACGGAGAACTttctaaatattacaaaaaggaCCAGAAGAAcaagaaagaaattaaaaatgatagaacCGAAGTACAAAACCAAAAAAGTCATTCAGAAAATGCAGCTagtgaaaatgaagaaaaaccAATTGTTAAAGAGGAACCAAATGAAGAAACCGATGACAGAAAAGAAGAATATGTTGATGTTGATTTCTCAACTACCgcgacaaaatttaaaaacgaattaagTTCTGTAGGGGAAAGTTCAACATATGAAAGTGGCGAGGTTCCAAACATTATTAGTGATTAA
Protein Sequence
MPGCPVTSKTLGTDQGSSSRSETPEDPQTSPTPSSCATPNSTTDLPDAELSFTVGITETTPYACQFCDKAFPRLSFLKKHEQTHGDHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTHCEAAFSRSDHLKIHMKTHDTQKPFQCTVCNRGYNTAAALTSHMQNHKRQRPETPASTACATNSAKTPVTVSEESVSSPDSYHCSQCGDMFKKQDHLQTHILNAHGSNLLSPEESAHKNVSLVIPDQILPQLTPKLACIYCTKDSFTTMEQLQIHVQSMHSSILNGDLREFSRGAQMPRSTPLNLMTPPPPLIPVNGHLPPSSLLYPCDMCTMRFPTIHRLRKHSVAVHGHCDFTRQKEISDTVHQSPLVCVQCALPFHTSAAFTEHYLMVHGGSSPSLSAVSPIPEQVKPTDLSRKNRRSSSVDRKSKRMCVKEDGSSRLDLMTPNAGTAQYEYPSMLLCNQCDAALPDFESFRNHLKSHLEQTGGIRSFLHTSGSTILDTFQQENLKVQNNCICPHCGTTFKDLVSCEQHVYAHFLKTAVEFGCQSCLTMFPTTDDLHKHLFEIHTHHLFRCSVCKEMFDSKVAIKIHFNMKHSTECKVFRCSTCPNLMFHTELEFTVHVRTVHGAHTLLSALQSHSKTLRCMFCRQVFGSDLEMQFHLATHTKQFRCPICSESFQIEFLLDRHIQTYHSNTRNINGENDDSIDGEKPIKKSSSSSPHQIGKTHSSPGRTSQKSSSGENNNVKKQHEVSQLNNCDICERNDFSNETELVAHRKLVHHARNNTKNGVVSLHCAYCNENCKTRTELENHMKSHSQSSGVSGKHKCNICDEICPSAVLLAEHKLTHCKVISGNCCTQCKSNLTNEEQFYSHLVQHSNNNNNGNQKSKSQVALPTPCVICRQTLISDVEVRIHAQFHLRNTMQQAEFQCSICFKIVDVQNVIITNGSYMCSECYSSPNDSQQRNFHCNECQFSFDTSVALEQHMDSVHSKTYTCTKCEAVFDTERDVHIHISTHLMAEGGNNHECHLCRRLFSSPMKLQAHLIEHTFAGCGGFTCYLCSAVFTGAQGLQTHIIEHGLAARPYDCPQCNLKFFFRAELDNHSYSHLGRSSRTPVELDVALMSPKAYYVSVNGKYDPSKNGELSKYYKKDQKNKKEIKNDRTEVQNQKSHSENAASENEEKPIVKEEPNEETDDRKEEYVDVDFSTTATKFKNELSSVGESSTYESGEVPNIISD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00470282;
90% Identity
-
80% Identity
-