Basic Information

Insect: Poecilus cupreus
Gene Symbol: Clamp
Assembly: GCA_963942605.1
Location: OZ012713.1:4553517-4568106[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4e-06 0.00027 22.8 1.7 1 23 98 120 98 120 0.98

2 8 1.9e-05 0.0037 19.2 0.2 1 23 158 181 158 181 0.95

3 8 1.1e-05 0.002 20.0 1.5 1 23 317 339 317 339 0.98

4 8 4.8e-06 0.00091 21.1 0.2 1 23 345 367 345 367 0.98

5 8 1.4e-06 0.00026 22.8 1.5 1 23 373 395 373 395 0.99

6 8 5.3e-07 0.0001 24.1 1.2 1 23 401 423 401 423 0.98

7 8 1.3e-05 0.0025 19.7 3.3 1 23 429 451 429 451 0.98

8 8 1.1e-05 0.0021 19.9 0.6 1 23 457 479 457 479 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4e-06	0.00027	22.8	1.7	1	23	98	120	98	120	0.98
2	8	1.9e-05	0.0037	19.2	0.2	1	23	158	181	158	181	0.95
3	8	1.1e-05	0.002	20.0	1.5	1	23	317	339	317	339	0.98
4	8	4.8e-06	0.00091	21.1	0.2	1	23	345	367	345	367	0.98
5	8	1.4e-06	0.00026	22.8	1.5	1	23	373	395	373	395	0.99
6	8	5.3e-07	0.0001	24.1	1.2	1	23	401	423	401	423	0.98
7	8	1.3e-05	0.0025	19.7	3.3	1	23	429	451	429	451	0.98
8	8	1.1e-05	0.0021	19.9	0.6	1	23	457	479	457	479	0.98

Sequence Information

Coding Sequence: ATGTTTGACCCAAACGCAATAACGACCCAACAGTCGACCCAAATCCAATACCAAGAACAAAAGACGGAGAACAAACAAGATGGCCAACAACAAAAAACAGAATTTCCCAGTTTTTGCTATGCAAACGTAAACATGATACACAAACTCACGCCGAACACTCAGGCGTTGAATTCGACTGTTAATATGGCACAATTAACGGAcgataaatgctatattacccAGCCATTTAGTTATAATTACGCCCTAGTTAATCAGATGCAGTTAGCCCAGAACACAATATCGAACATAACCTTTAAATGCGACATCTGCGGACTGATGTTTAACAATTTAAGTTTGTTGAATCATCACAAAAGAATACATACCACGAGTGGAGACCAAAACACGCAACACATAACGGTTCAAGTAGCAACAAACCAACAGGCCCCACCGCAAGCAGCCCAGATTCAAATTGTCTCTGCAGAAAGAATCAGATTTTCATGTGAAGAATGTGGACTAGCATTCGCTTCACAAACCGATTTAAAAACACACAAATCAGTGCAGCatcaacaaacaaatacaaaaggCAAAAACTGCGAAAGTTGTGGTACTCAGTTACCTCAAGACAACAACAAGAAAAAAACTGTGGTGAAGACAAAATGCGACGGCTGCATTTCCGCAGAAAGCATCGCATCTCAACCGCAGATCTTCGTGGTGGCGGCTGCTCCCCAGGAGCCCCAAACGGCGCAGCCTGTCAAGTACGAGACGCAGGAGACGCAAGTGACATCGCAGACGTCCCAGGCGAATCTAGGAACACAAAACAGCATTCCAATCGGTGTGAAAACTGTCACAGGTAACCATCCTGTAAAAAGAAGAGGCATGGCTTCTGTCACCAAGTGCCATAAGTGTAATGGATCGGGTATCATCTTCATAGGCGGCTCCAAACAGCAGCAGAATAACCAGGATAAACCGTTTCGGTGCAACATCTGCAACGGTTCCTTTAGCAGATACTCCAGTTTATGGTCTCATAAAAGACTTCATTCTGGGGAGAAAAATTTCAAGTGCAATATTTGTGGATTAGCTTTCGCCAAAGCCGCATATCTGAAAAACCACTCAAGAATTCATACAGGTGAGAAGCCCTACCGCTGCAACGTCTGCGGAATGCAATTCTCTCAATCTCCCCATTTGAAGAACCACGAACGAATCCACTCTGGTGAACGACCGTACGTTTGTGAAGTGTGTGAGAAGTCCTTCGCGAGGCACTCCACCCTTTGGAACCACCGACGGATCCACACGGGGGAGAAGCCCTACCGGTGTGAAATCTGCGGGAGCTGTTTTAATCAGGCTACGCATCTGAAGAATCACGCGAAGGTGCATTCGGGAGAGAAGCCatttaaatgtgatatttgctcGGTTGGGTTTTCGGATAGATTCGCATTGAAACGCCACCGAAACATCCACGAGAAATACGGCCGCACCAAACCCAACTCCAGCACCAGCGCGAGTCAAACAGTGTCCACCAGTGACTCTCAACAAGTTCAGCAGCAGCAACAGCAAATGACCGAAACCACAGACATTACAACTCTGCAAGTCCAGCTGTAA
Protein Sequence: MFDPNAITTQQSTQIQYQEQKTENKQDGQQQKTEFPSFCYANVNMIHKLTPNTQALNSTVNMAQLTDDKCYITQPFSYNYALVNQMQLAQNTISNITFKCDICGLMFNNLSLLNHHKRIHTTSGDQNTQHITVQVATNQQAPPQAAQIQIVSAERIRFSCEECGLAFASQTDLKTHKSVQHQQTNTKGKNCESCGTQLPQDNNKKKTVVKTKCDGCISAESIASQPQIFVVAAAPQEPQTAQPVKYETQETQVTSQTSQANLGTQNSIPIGVKTVTGNHPVKRRGMASVTKCHKCNGSGIIFIGGSKQQQNNQDKPFRCNICNGSFSRYSSLWSHKRLHSGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCEICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPNSSTSASQTVSTSDSQQVQQQQQQMTETTDITTLQVQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00029574;
90% Identity: iTF_01275627; iTF_00029574; iTF_00470231; iTF_01041161; iTF_01104985; iTF_00767491; iTF_00769068;
80% Identity: -