Hruf061587.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- Clamp
- Assembly
- GCA_951394225.1
- Location
- OX596292.1:1858231-1865246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.5e-06 0.00033 22.8 1.7 1 23 98 120 98 120 0.98 2 8 5.2e-06 0.0011 21.1 0.2 1 23 158 181 158 181 0.95 3 8 1.1e-05 0.0025 20.0 1.5 1 23 315 337 315 337 0.98 4 8 5e-06 0.0011 21.1 0.2 1 23 343 365 343 365 0.98 5 8 1.4e-06 0.00031 22.8 1.5 1 23 371 393 371 393 0.99 6 8 5.6e-07 0.00012 24.1 1.2 1 23 399 421 399 421 0.98 7 8 1.4e-05 0.0031 19.7 3.3 1 23 427 449 427 449 0.98 8 8 1.2e-05 0.0026 20.0 0.6 1 23 455 477 455 477 0.98
Sequence Information
- Coding Sequence
- ATGTTTGACCCTAATGCAATAAACGCTCAACAATCGACTCAAATACAATACCAAGAACAAAAGACAGAGAACAAACAAGATGGCGGCCAACAGAAGACGGAGTTTCCTTCGTTTTGTTACGCAAACGTTAATATGATACACAAATTGACACCTAATACACAAGCGTTAAATTCTACGGTTAATATGGCGCAATTAACCGACGATAAATGTTATATTACACAACCGTTTAGCTATAATTACGCCCTTGTTAACCAAATGCAATTGGCGCAAAACACTATATCAAATATAACTTTTAAGTGTGATATTTGTGgtttaatgtttaataatttaagcTTATTAAACCACCATAAAAGAATTCACACTACTAGTGGTGATCAGAACACTCAACACATTACGGTACAAGTCGCTACAAATCAACAAGCTCAGCCCCAAGCAGCCCAAATACAAATTGTATCTGCGGAACGAATACGATTTTCTTGTGAGGAATGCGGACTAGCTTTTGCGTCGCAATCTGACTTAAAAACGCATAAATCCGTGCAACATCAACAAACAAATACGAAAGGGAAAAATTGTGAGAGTTGTGGAACGCAGTTACCACAGGACAACAATAAGAAGAAGACTGTTTTTAAGACCAAATGCGACGGTTGTATTTCCGCCGAAACGATCGCCTCCCAACCGCAAATCTTTGTGGTGGCCGCCGCCCCACAGGAGCCCCAAACGGCTCAGCCCGTGAAGTACGAAACTCAGGAGAGCCAGGTTCAAACCACGCAAGGCAGTTTAGGGACGCAGAATTCGATTCCGATTGGCGTGAAGACTGTGACAGGCACTCACCCGGTGAAGAGACGAGGAATGGCCAGCGTTACAAAATGCCATAAATGCAACGGATCTGGAATTATTTTCATAGGGGGCTCcaaacaacaacaaaacaatCAAGACAAGCCATTTCGGTGTAATATTTGTAACGGGAGTTTTAGTAGGTATTCAAGCCTGTGGTCTCACAAAAGATTGCATTCCGGCGAGAAAAATTTCAAATGCAATATTTGTGGCCTGGCGTTCGCTAAGGCCGCGTATTTAAAGAACCATTCGAGAATTCATACAGGGGAGAAGCCCTACCGTTGCAACGTATGTGGAATGCAATTCTCCCAATCGCCCCACTTAAAAAACCACGAAAGAATCCATTCTGGGGAGCGGCCCTACGTTTGTGAGGTCTGCGAAAAATCTTTCGCGCGGCATTCCACCCTCTGGAACCACCGCCGCATTCACACCGGCGAAAAGCCTTACCGGTGCGACATCTGCGGGAGCTGTTTCAACCAGGCTACGCATCTGAAGAACCACGCGAAAGTTCACTCCGGAGAGAAGCCATTTAAGTGTGATATTTGCTCCGTTGGATTTAGTGATAGATTTGCGTTAAAGCGCCATCGAAATATTCACGAAAAATACGGCCGTACTAAACCCAACTCTAGCTCCAGCGGCAGCCAAACTGTAACGAACAGTGATGGTCAACAAGTTCAACAACAACAATTGACCGAAACAACAGACATAACAACATTACAAGTAcaattgtaa
- Protein Sequence
- MFDPNAINAQQSTQIQYQEQKTENKQDGGQQKTEFPSFCYANVNMIHKLTPNTQALNSTVNMAQLTDDKCYITQPFSYNYALVNQMQLAQNTISNITFKCDICGLMFNNLSLLNHHKRIHTTSGDQNTQHITVQVATNQQAQPQAAQIQIVSAERIRFSCEECGLAFASQSDLKTHKSVQHQQTNTKGKNCESCGTQLPQDNNKKKTVFKTKCDGCISAETIASQPQIFVVAAAPQEPQTAQPVKYETQESQVQTTQGSLGTQNSIPIGVKTVTGTHPVKRRGMASVTKCHKCNGSGIIFIGGSKQQQNNQDKPFRCNICNGSFSRYSSLWSHKRLHSGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPNSSSSGSQTVTNSDGQQVQQQQLTETTDITTLQVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767491;
- 90% Identity
- iTF_01226078;
- 80% Identity
- -