Pper034373.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:229848187-229848931[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6 9.5e+03 -1.5 0.4 58 66 6 14 2 17 0.57 2 3 1.8e-17 1.1e-13 52.8 4.3 4 70 116 181 113 181 0.92 3 3 10 6e+04 -7.5 8.8 61 61 204 204 191 216 0.58
Sequence Information
- Coding Sequence
- ATGGCCACGCGTTTTAGATGTCTTAGATGTTCAAAAATTATTGAGTGTTCACCGTATGATACATCAATTCTTTTGGAACACATTAAGACAGATCATCCAGAGTTTGTTTTACCGGACGATGATACAATGAATTCTCAAGATACAAAATCCGTCACAGAACATTCAATTCCGAGAGTTCAACTACCACCAGAGAATGACAACTTGGAGGAGGAAACAATTCGTAGTCCGGGTCGGAAAGCCATGTACACGCGCAAATATAAGGTTAACAGTCCAGTGATGCCACCCCAGAGCCCACAGAAACGTCGCATGTACAGGACATCCGTAGAAAAATGGCGTCCAGGAAGAGGAACAATATATTGTCCAAAATGTGGTACAAACAAAAGGCCGATTATAAGGTCCAGATCGGAAAAGATGTCATATTCAACTATTGGTGCTGCCTGTATCCTAACTTGTTGGCCGCTGTGCTTTATACCTTGTCTATCGTCGGCGCCAAAAGACTATTTACATTGTGCCGAGTGTAATAACTTTTTGGGAATGTATGATAAACAAAATAACTGCGTTAGGCCAAATCGAGAATTTGTTGATTGTGACAAATGCGATAATTGCGATAAATGCGGTAAATGCGATAAATGCGACAAAAAATCTGTCGGAGATAACGAAGGAAATGAGATATAG
- Protein Sequence
- MATRFRCLRCSKIIECSPYDTSILLEHIKTDHPEFVLPDDDTMNSQDTKSVTEHSIPRVQLPPENDNLEEETIRSPGRKAMYTRKYKVNSPVMPPQSPQKRRMYRTSVEKWRPGRGTIYCPKCGTNKRPIIRSRSEKMSYSTIGAACILTCWPLCFIPCLSSAPKDYLHCAECNNFLGMYDKQNNCVRPNREFVDCDKCDNCDKCGKCDKCDKKSVGDNEGNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -