Basic Information

Insect: Pocota personata
Gene Symbol: -
Assembly: GCA_963082735.1
Location: OY720430.1:15962631-15965914[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.011 2.7 10.3 0.1 2 19 197 214 196 216 0.96

2 10 0.0014 0.34 13.1 7.4 1 23 224 247 224 247 0.97

3 10 0.026 6.5 9.1 0.3 3 23 254 274 252 274 0.94

4 10 0.0021 0.53 12.5 0.5 2 23 280 301 279 301 0.94

5 10 0.0031 0.77 12.0 4.1 1 23 309 331 309 331 0.98

6 10 1e-06 0.00025 23.0 1.8 1 23 337 359 337 359 0.99

7 10 5.3e-05 0.013 17.6 1.0 3 23 366 386 364 386 0.96

8 10 2.5e-05 0.0062 18.6 3.1 1 23 392 414 392 414 0.99

9 10 5.8e-05 0.014 17.4 0.7 1 23 419 441 419 441 0.93

10 10 0.00011 0.027 16.6 2.2 1 23 446 469 446 470 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.011	2.7	10.3	0.1	2	19	197	214	196	216	0.96
2	10	0.0014	0.34	13.1	7.4	1	23	224	247	224	247	0.97
3	10	0.026	6.5	9.1	0.3	3	23	254	274	252	274	0.94
4	10	0.0021	0.53	12.5	0.5	2	23	280	301	279	301	0.94
5	10	0.0031	0.77	12.0	4.1	1	23	309	331	309	331	0.98
6	10	1e-06	0.00025	23.0	1.8	1	23	337	359	337	359	0.99
7	10	5.3e-05	0.013	17.6	1.0	3	23	366	386	364	386	0.96
8	10	2.5e-05	0.0062	18.6	3.1	1	23	392	414	392	414	0.99
9	10	5.8e-05	0.014	17.4	0.7	1	23	419	441	419	441	0.93
10	10	0.00011	0.027	16.6	2.2	1	23	446	469	446	470	0.96

Sequence Information

Coding Sequence: ATGGAAGAATACGTAATAGAGCTCCCGGTCTGCAGAGTCTGCCTTCAAACCGCAGTGGAATGTATAGAAATGGATTCGCCCATGACAGACGAAGACGGTGATGAAAAATCCCAAACCTATTTCGAGTGTTTCAAGTCGTGTACACATCTAGATGTTAAGGTTGATGATGGGCTACCAAAACTCATTTGTTCTCTATGTTCCACGGAACTACGGGCTACTTACGATTTCATTGCAAAGGCCAAGAATTCTCATGAAGTGTTGCTAATGCAATTATTGGACGATGTAAAACCGGAGTACATTATACATGAATATGATCCGCAACCAAATGATCTATCTGAGGAGACGATATTTTTACCAATCGATAATGTGGATGAAATTTTCGAAGAAGAGACCGATAACTTTGGCGATATGGAACTAGAAGATGAGAATAATGAAACAGAAAAACCAGAGAAGGACGAAGAACAAGAATCTGAAGAGGAAAGATCAGCTAGTGAAAATGATGCAGTAGAGGCGAACTCTGAAAACGAAGAGCGAGTAGAAGTATTAAATGAGGAAACTGTAGACCATCAAGATCCTCAGGATAGAGTTAAGTGCAATTTGTGCCACTTGGAATTCGATAGCGCTGAAGATCTAAGGGAGCACGGCGATTGTGAACACCCACATGTAACGTTTTGCTGTTCGATCTGCTTTCATCGGTTTGCCAGCAAGTACACACTGACGGATCACATGAAACGCAAACATGATGGAACTTATGTAAACTGCGATGTATGTGGAACTTCGGTGAAAAGTAGCTTCTTGCGTGCACACAAAAGACAGGTGCACAGAAAGACACCTTTCCTCTGTTCAGCTTGCCCGCGCACCTTTAAAACAACAACGGGCCTGCAAATACATTCCGAGACACACAAGGAGAATAGACAACGGAATTTCGAATGCGAACAATGTCACAAGAAATTTCTCACAGAACGAACGTACAAAGTGCATGTACGAACGCACTGGCACAGAGAGCCTTTCAAATGTAGCCTCTGCGACAAGCAATTCATGCAAAAGGTCAACCTCAGACTGCACATGCAAATGCACCGTGGCGAAACCATGGACTGCTTGTATTGCGAGAAAAAGTTTGTTCGCAAAACAGATTTAAGCGTACACTTGCGTTTCCATACGGGAAATTTCCCCTACGAGTGTCAGTACTGTGATAAACGTTTTGCTATCGTAAGCCATTTGAACTATCATCAGAAGCGCCATCAAGGCTATATCTACAAGTGTGACGTGTGTGACAAAGAATTTATCAACATGTCGGGATTGAGGAATCATTCGTTCCAGCATACAGCTATGCCCTTTAATTGTGCAGTTTGCGACAAGGGCTTCCCAACCAAGTTCAAAATAAAACGACACTTAAAAACCGTGCATCATGTGGAGGATTCTGAAGAGCTTGAACGTTGTATTACGacagagaaaattaaattggaacCTAGTATTGAAGAAACTAGTGAAGAGTTGCTAATAGAGGAGGCTGAAGGAGACCATTCAATGGATGTGTATGCAAAGTAa
Protein Sequence: MEEYVIELPVCRVCLQTAVECIEMDSPMTDEDGDEKSQTYFECFKSCTHLDVKVDDGLPKLICSLCSTELRATYDFIAKAKNSHEVLLMQLLDDVKPEYIIHEYDPQPNDLSEETIFLPIDNVDEIFEEETDNFGDMELEDENNETEKPEKDEEQESEEERSASENDAVEANSENEERVEVLNEETVDHQDPQDRVKCNLCHLEFDSAEDLREHGDCEHPHVTFCCSICFHRFASKYTLTDHMKRKHDGTYVNCDVCGTSVKSSFLRAHKRQVHRKTPFLCSACPRTFKTTTGLQIHSETHKENRQRNFECEQCHKKFLTERTYKVHVRTHWHREPFKCSLCDKQFMQKVNLRLHMQMHRGETMDCLYCEKKFVRKTDLSVHLRFHTGNFPYECQYCDKRFAIVSHLNYHQKRHQGYIYKCDVCDKEFINMSGLRNHSFQHTAMPFNCAVCDKGFPTKFKIKRHLKTVHHVEDSEELERCITTEKIKLEPSIEETSEELLIEEAEGDHSMDVYAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01541654;
90% Identity: -
80% Identity: -