Basic Information

Insect: Pocota personata
Gene Symbol: -
Assembly: GCA_963082735.1
Location: OY720429.1:33592861-33594977[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00033 0.081 15.1 1.1 2 23 117 138 116 138 0.97

2 10 0.037 9.2 8.6 2.4 1 23 218 241 218 241 0.92

3 10 1.7 4.3e+02 3.3 0.7 2 22 249 269 248 269 0.83

4 10 7.9e-07 0.0002 23.3 3.5 1 23 318 340 318 340 0.96

5 10 3.9e-08 9.7e-06 27.4 1.6 1 23 347 369 347 369 0.99

6 10 8.7e-08 2.2e-05 26.3 1.2 3 23 384 404 383 404 0.99

7 10 2e-06 0.0005 22.0 0.4 1 23 410 432 410 432 0.99

8 10 3.9e-07 9.8e-05 24.3 0.2 1 23 438 460 438 460 0.98

9 10 3.8e-07 9.5e-05 24.3 0.6 1 23 464 486 464 486 0.99

10 10 0.035 8.6 8.7 1.0 2 22 493 513 492 516 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00033	0.081	15.1	1.1	2	23	117	138	116	138	0.97
2	10	0.037	9.2	8.6	2.4	1	23	218	241	218	241	0.92
3	10	1.7	4.3e+02	3.3	0.7	2	22	249	269	248	269	0.83
4	10	7.9e-07	0.0002	23.3	3.5	1	23	318	340	318	340	0.96
5	10	3.9e-08	9.7e-06	27.4	1.6	1	23	347	369	347	369	0.99
6	10	8.7e-08	2.2e-05	26.3	1.2	3	23	384	404	383	404	0.99
7	10	2e-06	0.0005	22.0	0.4	1	23	410	432	410	432	0.99
8	10	3.9e-07	9.8e-05	24.3	0.2	1	23	438	460	438	460	0.98
9	10	3.8e-07	9.5e-05	24.3	0.6	1	23	464	486	464	486	0.99
10	10	0.035	8.6	8.7	1.0	2	22	493	513	492	516	0.85

Sequence Information

Coding Sequence: ATGGATAGGTCTGAAGGCGAGAGTTCGGAGGATAATGAGATGAAAACGCAGAAGTCTGAGGACAGAGACGAGTCGTCGCAGAGCTGTGACAACGATGAGGAGAAACACACGACGAGAACGCGAAGTGGAACTTATCGCAAAAATCTGCGTCTAgtgaggaagaaaagaaaacctCGAACCAAGGTCAAACCCCAAATAAAAGCCAAGAAGTCTGCGAAAGTCGTGAAGGAGCTCTCAGAAGAGACAGACAAGGAGGACAATGGTGATTTGGAGGAGATTTTAGTAGAACCTGACATAAAATCAGACATCGAAGAGGACGAATGCATACCAAATGGTTGCAAATCAATTGAATGCTTTATATGCGGCTGTAGATTAAGTAGAATCTACAATTTGCGTCTTCACATGGACACACACACGGAAGAGGAATCGTTTAACAtggaaacttttgaaaattcagAGATATTCAATGTCTTGAATCCGCACAAGAGGAACATCGATTCGAATATCATTAAGAATTTCGTGATTCAAGAAATCAAAGCGAAGCGATACTCCCAGTTCTATTGCATCCTCAACGAGGCGGCGGTGGAATTGCACATCAGTGATTCCGAAACTGACTCTGATGGTGCCGACGATCTTATACCCCACAACAACTACCGATGTGAGCTGTGCAAAAAGAATTTCGATCGCCGCTACAAGGCACTCTTCCATCAGAAGACCGCTCACGTGAAGACAGACTTTGCGGTTGAATGCgactactgcctgaagaagttCGTTTGCATGAATCTGCTGATCTACCATTTGAAAACCCAGTGCGAGAGCGATGAAAAGCCAGTGCCTTGTACCGAGCGCTTCATGAAGTTCCTTTTGAAGGCCAACCTGGACCACTATGCGAGTCTAGCTCAGGCAAGAGAGCAAAGAAAACTGCGCAAACTGACCGAAGCACCAAAATCGTACACCTGCAATACATGTAACAAAACGTTCACCCGCCAGGAGCATCTCAATCGCCATAGTGCCGTTCATCTACCCGACGAGATGAAGTTCGAGTGTCCAGTCTGCGATAGACGGTTCAATCGAAAGGACAACATGCGTTCGCATATGAAGACCCACACCGAGGAGGGAGCACGTAACGCAGAATCACGGAAAATCCTCTGCTCTTATTGCGGACGAAGTTTTAGTAGCAAATCCAACTACGTAGTGCACATGCGGCGGCATACTGGTGAGAAGCCATACAAATGTGATGTCTGCGGGAAGGGATTCCCCAAGTCGACAGATCTGAATTCCCACAAGATCACCCACACGGGGGAGAAAAACTTTGTGTGTACGATCTGTAATAAGGCGTTTGCCAGATCAGCTGTACTTTCGAAACACATGCGAGTGCATAGCGGCCCATATCCGTGTACATTTTGTcagaaaattttcacaaaaccaagtgCCTTGACTGTTCACTTGCGGACACACACCGGAGGTCGACTGTGCATGTGTGTTGTGTGCAATAGATCTTTTGACACGAAGAATGAATTGGACGGGCATTTTGCGACAACGGGGCATAATAATGAGCCCAAGCGGGTAATAGTGATAAAAGAACTTGCGATTTCAGTCAATACTTCCAAGAGTAGTGAGGAAGATCGTGCAGCATCACTTCAACCACCACTACCAACATCAACGCAGTCGCCTACaatggaaattaaaacaaatgacgATCCCTTGGAGATTAAAGAGGAAGAATGGCGAACGACAAAAGTTAAAGTGCCTGTAAATGAAGCAATTCAAAGTGTCCTGCAGAGGTCAACCAACACAGCCACCGCGGAGGCTGTTGTGAACTCCAACAGCGGTGCACAAGAGGTGTCTGCACAGGAGAATGATAGTGTAATGTCTGCGTATTCTCCACTGGATGCTGGGTATGGAGATGATATGCAGTACAGTGATTGGTAA
Protein Sequence: MDRSEGESSEDNEMKTQKSEDRDESSQSCDNDEEKHTTRTRSGTYRKNLRLVRKKRKPRTKVKPQIKAKKSAKVVKELSEETDKEDNGDLEEILVEPDIKSDIEEDECIPNGCKSIECFICGCRLSRIYNLRLHMDTHTEEESFNMETFENSEIFNVLNPHKRNIDSNIIKNFVIQEIKAKRYSQFYCILNEAAVELHISDSETDSDGADDLIPHNNYRCELCKKNFDRRYKALFHQKTAHVKTDFAVECDYCLKKFVCMNLLIYHLKTQCESDEKPVPCTERFMKFLLKANLDHYASLAQAREQRKLRKLTEAPKSYTCNTCNKTFTRQEHLNRHSAVHLPDEMKFECPVCDRRFNRKDNMRSHMKTHTEEGARNAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFVCTICNKAFARSAVLSKHMRVHSGPYPCTFCQKIFTKPSALTVHLRTHTGGRLCMCVVCNRSFDTKNELDGHFATTGHNNEPKRVIVIKELAISVNTSKSSEEDRAASLQPPLPTSTQSPTMEIKTNDDPLEIKEEEWRTTKVKVPVNEAIQSVLQRSTNTATAEAVVNSNSGAQEVSAQENDSVMSAYSPLDAGYGDDMQYSDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542385;
90% Identity: iTF_01223635;
80% Identity: iTF_01223635;