Pxyl025476.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000522.1:4452172-4453956[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00024 1.1 10.1 0.2 26 48 108 130 102 134 0.89 2 10 0.013 64 4.5 0.2 23 48 135 160 130 163 0.88 3 10 0.76 3.7e+03 -1.2 0.0 21 45 163 187 159 194 0.78 4 10 0.075 3.6e+02 2.0 0.1 25 48 197 220 192 224 0.90 5 10 0.34 1.6e+03 -0.1 0.1 25 48 227 250 222 253 0.85 6 10 0.015 72 4.3 0.1 21 48 283 310 274 313 0.86 7 10 0.0004 1.9 9.3 0.0 16 48 346 378 343 382 0.89 8 10 0.0013 6.1 7.7 0.1 24 48 382 406 378 410 0.90 9 10 0.05 2.4e+02 2.6 0.7 22 48 410 436 407 440 0.87 10 10 0.16 7.7e+02 1.0 0.0 27 48 472 493 466 497 0.87
Sequence Information
- Coding Sequence
- ATGGACCAAAACACAACGCACACCCAAGTTGAGGAAGTGTTCATCAAGCCAGAAATTATTGAAGTGAAGCTAGAAGCAAATGACAACCAAACATTTGACCCATACCAAGACTCAGAATCCGTATTCAATTTAAAAAGTAAAAAACACACTGAAGGCCCCGAAGAAACACAATATAACAATTACCAAGAAGGTTACTTCAATAGCTTAGACTCCGGATATCCAACCTCTTTTGACAGCAGTCCAACAGGAGAGACGTCTAATGAAAGCAACACCATCAACATACCAGGTAGAGTGTATGAGAATGGCAAAATCAACAGACCTGCCTGTCCAATATGCCAGCAAACATTCAAAAACCGAGCCAACCTGAAAAACCACCTGAAATTCGTTCACGCAGACGAAAGTGCACCTGTCGAATGCAACCAGTGTTTCCGATTATTCAAAACCATAGCCAATCTGCGATCTCACATAAACTCTGTCCACGTTGAGAGTGACAAAGAAGAGGTTTGCAACATCTGTCAAAAGAGTTTTAACTCGAAAAAGAAACTGAGCAACCACATGTTTTACGCTCATCCTGAACCTCAAGACAGTGTCACCTGTGAGCAGTGCTCCAAGACTTTTAAAAGCAAATACAATCTTAAGGTGCATATGCGGTTAGTGCATCCACCTGAGGAATGTTCGGTAGAGTGTCCGGAGTGCCACAAACAGTTCAAAGTGGATATGCTGCTTCAGAGACACATAAAATGGGCGCATTCGAATGACGGCATGACATACAAATGCCATGAGTGTGGCAGAGTGCTGCCATCTTTGTCATGCTACAAGAAACATTTAGAAAATGTCCACCCGGACTCAAATGAAATAGTTATGTGTGAATTATGCCAAAAGATGTTTAAAACCCAAACGAACCTGCGAATACATTTGAAGCGCGTGCATAGCGAGGAAAAGCTAGAGAATAAGACATATAAAGAAGGTGATTTGCCATGCACAGAGTGTGACAGACGGTTCTCAACCAACACCGCATTACAATGGCACTTTGACAGAACCCACTCTGAGAACCGTCGTAGCAACACCTGTGGGATATGCCAGAAAGAGCTGTCAGACTACGGAGGCCTAAAAAGGCATATGGAGATGGTCCATTCAATAGATAAAGTAACCTGTTTCATATGCAATAAGGATTTTAAATCACAGATGAACCTTCAAAGACATATACAAGTGACTCACGCGCCGCCCGAAGCAGCACAAACCTGTGACATCTGTCAGAAGACGTATAAATGCGCTATGCATCTCCGCATTCACATAAACACAGTCCACCCAAAAGACGGCACCACAAATTGTGACGTATGCCAAAAGCAGTTCAGCTCGAAAAAGTACATGCTGAAACACAGAAAAACTCACATTGTGACGCGGGATTTCCCATGTAATATATGTATGAAGATGTATAGGAGTATGGAGGATGTTAAGAAGCATATAAAGAGGGTTCACACTAAGAACGGCGATGGTTCTGTCTCGTTTTCGCCTGTAAACACGTTGCCACACGTCTGTGTTGCGTGTCAGACGTCTTATATGACGCAGCAGGATTTGACAGAACATATAAATGAGATGCACAATGAATTGCATCAACAATCGCCACGGAATTGCTTTAAATGCAACCGTATTTTTGGCAACGATGCAGAATTACACTCTCATATACTATCCTGTGGTAGCGAACAAAGAGAGCCTTTGGATTTGGTCAAAGTTGAGATAAGTTATAGTGATAACGATTCAGAAACGGAATGTAATGATAGTTAG
- Protein Sequence
- MDQNTTHTQVEEVFIKPEIIEVKLEANDNQTFDPYQDSESVFNLKSKKHTEGPEETQYNNYQEGYFNSLDSGYPTSFDSSPTGETSNESNTINIPGRVYENGKINRPACPICQQTFKNRANLKNHLKFVHADESAPVECNQCFRLFKTIANLRSHINSVHVESDKEEVCNICQKSFNSKKKLSNHMFYAHPEPQDSVTCEQCSKTFKSKYNLKVHMRLVHPPEECSVECPECHKQFKVDMLLQRHIKWAHSNDGMTYKCHECGRVLPSLSCYKKHLENVHPDSNEIVMCELCQKMFKTQTNLRIHLKRVHSEEKLENKTYKEGDLPCTECDRRFSTNTALQWHFDRTHSENRRSNTCGICQKELSDYGGLKRHMEMVHSIDKVTCFICNKDFKSQMNLQRHIQVTHAPPEAAQTCDICQKTYKCAMHLRIHINTVHPKDGTTNCDVCQKQFSSKKYMLKHRKTHIVTRDFPCNICMKMYRSMEDVKKHIKRVHTKNGDGSVSFSPVNTLPHVCVACQTSYMTQQDLTEHINEMHNELHQQSPRNCFKCNRIFGNDAELHSHILSCGSEQREPLDLVKVEISYSDNDSETECNDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01222677;
- 90% Identity
- iTF_01222677;
- 80% Identity
- iTF_01222677;