Pxyl012318.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000570.1:5449976-5453617[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.2 9.6e+02 0.7 0.1 26 48 218 240 205 242 0.83 2 9 0.37 1.8e+03 -0.2 0.0 27 51 248 271 241 273 0.87 3 9 9.9e-05 0.48 11.3 0.4 20 48 325 353 312 360 0.82 4 9 0.12 6.1e+02 1.3 0.1 21 48 383 410 377 416 0.81 5 9 0.035 1.7e+02 3.1 0.0 18 44 435 462 429 466 0.79 6 9 0.00039 1.9 9.3 0.0 21 45 467 491 462 498 0.89 7 9 0.073 3.5e+02 2.1 0.1 25 45 498 516 492 519 0.83 8 9 0.0042 21 6.0 0.1 21 46 520 545 512 551 0.83 9 9 0.0019 9.1 7.2 0.1 21 43 548 570 544 575 0.90
Sequence Information
- Coding Sequence
- ATGACGGAGTTATGCATTAAAACTAGTAGCTTGTGTCGCTGCTGCCACGCTAAAGGAGATTTTAAAAGCCTGTCCATTCCATACACTCACCTTGGCAAGCAAGAAATATATACGCATTTGTTGAAGGAATGTTTCGATATTTTTATATCACCACCAATAGACAGCCCGGCACAGTTACACTCAATATGCAACACCTGCGTGACAAGCCTGCAGCAAGCATGGAGGTTCAAACAACAGGTGCTGACGTGCGAGAACAAGTTCCTCGAGTTGTATGGGAACGAGCTGAAACTGAAAGCTGAATTCTTAGCCAATGATGTAAAACAAGAGATTTTTGCTGATGAGGACATTGAAAAAGGAGATTTGGATCATAAATTCGGGGATGAAGAAGACGAGAAACCTATACGAGTGGAGGTATTCTTTGAACGGCTACCAGCGCAGGGAGAGACTTCTAATGAGAAAGAGAACTCTTGCAGAGAGAGAGAAAAGATGGAAGAGAATGATGGAGATGACAGCCTTAGTGATGATGAACCACTCACCACACACCAATCGTCCAAACCGACAAAATTCTCCTGCGATCTCTGCCCGAAACAATTCAAGTACCAAGCTGCCTTAGAAAGCCACAAGAAGAAACATACCCAAGGACCAACATACAAGTGTTATATCTGCGAGAATAAATTCGCAACTAGCAAAATATTGACGAGACACATAGCGAAAAGCCACGCCGATGGCAACTCGTTCCCCTGCACTTTATGTACCGATGTATTCGACGCGGCCACAGTACTAAAGAACCATTTAAACGCACACTTTAAAAAAACTGAATTCAAGTGTGAAATATGCGGGAAAGACTTTAAGAGAAAACATGGATTAAACGAACACATGCTTGTCCATACGAAGGTGAAAAAGTACTCATGTGAAATTTGCAACAAGAGTTTTGGACACAGCCAGACGTTGAAATCGCATGAACGCACTCACACGGGTGAAAGGCCGTACGTGTGCGATATCTGCGGGCGCGGATATCCGCAGAGTGCTCATTTAAGACGCCACATTTTTATCATTCACAGTGGTATTAAACCACACGCTTGCACAATTTGCAAAAAGAAGTTCTCTAGTAAAGGATACTTATCTATTCATCAAAGGACGCATACAGGAGAGAAACCTTTTTCGTGCGATGTGTGCAAGAAGCCGTTTGCGGCGCAGACAACGTTGAGAGTGCACATGCGTGTGCATACTGGCGAAAAGCCATACGCGTGCGCTATGTGCGGTCGTCAGTTCGCACAGTTCGCCAGCTTCAAACTTCACGAGAGATCGCACACGGGGGAAAAGCCGTTCGCGTGTAAAATATGTAAAAAGACGTTTTCGGATAAGGGCTACTTACGGATACATATGCGGACGCATACAGGTGAAAAGCCATACACATGCGATGTGTGCAATAGACAATTTAGGGAGTCGGGGCAGTTGAAAAAGCATACCCAAGTGCACACGGGAGAAAAAGTGACATGTAAGATTTGTAACAAGCAAATATCAAGAGATCTAACTAAACACATGCGGGTACATTCGGGTGAGAGACCGTACAGTTGTAATATGTGCGATAAACAGTTTGCGGTGAGTGGCAATTTAAGGACCCATATGAGAACGCATACTGGGGAGAAGCCGTATGAGTGTGAATTGTGTCATACACAGTTCAGTCAGAGCGGGACGCTGAAGAGGCACAGATGCTCGCGTCTGGACAAAGCGGAACATGACAATGTGTAG
- Protein Sequence
- MTELCIKTSSLCRCCHAKGDFKSLSIPYTHLGKQEIYTHLLKECFDIFISPPIDSPAQLHSICNTCVTSLQQAWRFKQQVLTCENKFLELYGNELKLKAEFLANDVKQEIFADEDIEKGDLDHKFGDEEDEKPIRVEVFFERLPAQGETSNEKENSCREREKMEENDGDDSLSDDEPLTTHQSSKPTKFSCDLCPKQFKYQAALESHKKKHTQGPTYKCYICENKFATSKILTRHIAKSHADGNSFPCTLCTDVFDAATVLKNHLNAHFKKTEFKCEICGKDFKRKHGLNEHMLVHTKVKKYSCEICNKSFGHSQTLKSHERTHTGERPYVCDICGRGYPQSAHLRRHIFIIHSGIKPHACTICKKKFSSKGYLSIHQRTHTGEKPFSCDVCKKPFAAQTTLRVHMRVHTGEKPYACAMCGRQFAQFASFKLHERSHTGEKPFACKICKKTFSDKGYLRIHMRTHTGEKPYTCDVCNRQFRESGQLKKHTQVHTGEKVTCKICNKQISRDLTKHMRVHSGERPYSCNMCDKQFAVSGNLRTHMRTHTGEKPYECELCHTQFSQSGTLKRHRCSRLDKAEHDNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01222673;
- 90% Identity
- iTF_01222673;
- 80% Identity
- iTF_01222673;