Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000522.1:5084405-5088801[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0018 8.5 7.3 0.0 21 43 284 306 282 312 0.90

2 5 0.00063 3.1 8.7 0.0 22 52 313 343 310 344 0.88

3 5 0.028 1.4e+02 3.4 0.0 20 43 339 362 335 367 0.84

4 5 0.0022 11 7.0 0.1 22 47 369 394 366 399 0.84

5 5 0.00061 3 8.7 0.0 21 48 396 422 391 426 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0018	8.5	7.3	0.0	21	43	284	306	282	312	0.90
2	5	0.00063	3.1	8.7	0.0	22	52	313	343	310	344	0.88
3	5	0.028	1.4e+02	3.4	0.0	20	43	339	362	335	367	0.84
4	5	0.0022	11	7.0	0.1	22	47	369	394	366	399	0.84
5	5	0.00061	3	8.7	0.0	21	48	396	422	391	426	0.88

Sequence Information

Coding Sequence: ATGGAGGATGGCATGGACATAGAGGAACATGATCTGTTGAACAACCCTACTGTGAGGAGTGTGTTTCCAGATCTTGCCGTTCTCAAACAAGAAATTATTGATTTTGATACAAGTGAAGGTGTAGCACCAGAAACCTTTACAACGCCGGAAGTACCAAAGAGATATGAAAACGAAAATCAACTACACAATTTAACGGTCTACAGTAGGGATCATCCTACCGAGTGCTCCACTCAAGACCTGGATGTGAAACCTGACCACCTGTGTAGTGACATGCATGACACAATAACTGTTAAGGGCAACATTTTGACGGAATATCATGAAATTGAAACTGAAATCAAGAAGGAATCAGAGAATGTTGTACCAAATGAATTGCCATTTTACAGAAACAGAATTATACTCGGCAAGATACAAGTAGAAGAGTCTGATGAAGAACGAGAAATTGATGCACCAGGTGACTGTAATAATGTTGTAAACACCAAAACAAACAATGATCAAGATTTGGCAGTGTCAATATACACTGATGTAAATAGAAGCATGAGGATAACAAAACAGTATTATGAAATGGAAAAATGTTTGGGAGCGAAAATTATTCTAACAAACTGTTATACAACTCTATTGAACCATAACTGTTACTGTGCTCAGTGTGCAGTGTTGTTCCCCACCACGGAAGCGTATAGTGAACATTACACGAGCACACACACCGAGACCACTAACTCCACCAAAGCCTCGGCTTCTCTTGTGAAACGTAAACAAATCATATTCCTACGTGATAAAGCATTTGTGTGTGACTCCTGCATGAAAACATTCAGCAAAAAAAGTAGCTTGATACAGCACATGTTAATTCACACTGGCGAAAAGCCATTCCAGTGTGACATTTGCGAGAAAACCTTCAAACAACGAAAAACGATAAAAAGGCACAAATTAATTCATACTGGCGAAATGCCATTCGTGTGTGACATTTGCACGAAATCTTTTAATCAAAGACGTTATCTTAAGAAGCACAAGTCACTTCACACTGGCGAAAAGCCATTCCAGTGTGACATTTGCAAGAAAACATTTAGGCATCGGGGCACATTGAAAGAACATAAGTTAATTCACACTGGGGAAATGCCCTTCCAGTGTGACATTTGCACGAAAACATTTAGACAAAGAACTCATTTGAAGAACCACAAGTTACTTCACACTGGCGAAAAGCCATTCCAGTGTGACATTTGCACGAAATCATTTACCCAAAGAGGCAATCTTAAGAAGCACATGTTACATCACACTGCACCCCAGTCATAG
Protein Sequence: MEDGMDIEEHDLLNNPTVRSVFPDLAVLKQEIIDFDTSEGVAPETFTTPEVPKRYENENQLHNLTVYSRDHPTECSTQDLDVKPDHLCSDMHDTITVKGNILTEYHEIETEIKKESENVVPNELPFYRNRIILGKIQVEESDEEREIDAPGDCNNVVNTKTNNDQDLAVSIYTDVNRSMRITKQYYEMEKCLGAKIILTNCYTTLLNHNCYCAQCAVLFPTTEAYSEHYTSTHTETTNSTKASASLVKRKQIIFLRDKAFVCDSCMKTFSKKSSLIQHMLIHTGEKPFQCDICEKTFKQRKTIKRHKLIHTGEMPFVCDICTKSFNQRRYLKKHKSLHTGEKPFQCDICKKTFRHRGTLKEHKLIHTGEMPFQCDICTKTFRQRTHLKNHKLLHTGEKPFQCDICTKSFTQRGNLKKHMLHHTAPQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01222959;
90% Identity: iTF_01222774;
80% Identity: iTF_01222774;