Pxyl018799.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plutella xylostella
Gene Symbol
-
Assembly
GCA_905116875.1
Location
CAJHNJ020000543.1:6047434-6058342[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.0081 17.2 0.1 3 23 117 137 116 137 0.97
2 18 9.7e-07 7.4e-05 23.7 1.2 1 23 143 165 143 165 0.99
3 18 6e-06 0.00046 21.2 2.7 1 23 171 193 171 193 0.99
4 18 1.3e-05 0.001 20.1 2.6 1 23 208 230 208 230 0.99
5 18 0.00012 0.0092 17.1 2.4 1 23 245 267 245 267 0.98
6 18 4.8e-05 0.0037 18.3 2.9 1 23 282 304 282 304 0.98
7 18 3.8e-07 2.9e-05 24.9 1.5 1 23 319 341 319 341 0.99
8 18 0.00017 0.013 16.6 2.8 1 23 347 369 347 369 0.98
9 18 1.2e-05 0.00092 20.2 2.1 1 23 375 397 375 397 0.99
10 18 0.039 3 9.2 1.8 1 23 404 426 404 426 0.98
11 18 6.5e-07 5e-05 24.2 2.3 1 23 432 454 432 454 0.99
12 18 0.045 3.4 9.0 1.8 1 23 461 483 461 483 0.98
13 18 2.7e-06 0.0002 22.3 1.5 1 23 489 511 489 511 0.99
14 18 0.00051 0.038 15.1 0.7 1 23 518 540 518 540 0.99
15 18 2.9e-06 0.00022 22.1 1.9 1 23 546 568 546 568 0.98
16 18 0.0021 0.16 13.1 0.3 1 20 574 593 574 596 0.93
17 18 4.2e-05 0.0032 18.5 1.4 2 23 603 624 602 624 0.96
18 18 3.8e-06 0.00029 21.8 1.4 1 23 630 653 630 653 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCCGAGCCCATGAGCTTCTACAGCCATGGGGGTGTCCACGGGGGCGGCTCGCTGGTGCGCTCGGAGTCGCACCTGCTGGGGCTCGGCCAGCACCCCGAGGACTCCAAGGACAGCCTCGCGCACCCGCACCAGGACATGCTGCACCAGCAACAGGATATGCAGCATGATGATGAGCTGAGCTTCAAAGGAATGGACGACGAAGGGGTTGATATGGACATGGATGGCAGGCAATGCTCTCAGGGCATGGGCGTGGACATGGGCTCAGTACAAACAAAGATGGAGGTCACGAACGGGTCTCAATCCACGCCGCGATCCAAGCCGCAAGCCTGTAAGGTTTGCGGTAAAGTCCTCTCATCAGCCTCTTCATACTACGTCCATATGAAGCTACACTCTGGAAACAAACCATTTCAGTGCACTGTGTGCGACGCGGCGTTCTGTCGCAAGCCGTACCTCGAAGTGCACATGCGCACGCACACCGGCGAGCGCCCGTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTACACACTGATGAGCACATGCGCGCCTTGATGGTGAAGGACCGCCCCTACCAGTGCGAGCTCTGCCTCATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAACACACACGGAGGAGCACAGGCGCGCGTTGCTGGCTAAGGAACGGCCCTACCAGTGCCACGTGTGCTATGTGCGATTCACCCAGAAGTCAAGTTTGGGCCGACACGGCAAGATACATACCGAGGAGCACAGACGGGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTATATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATATGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACATACTGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCGTACCAATGCGACGCGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACATCCACAAGCGGACGCACTCAGTCCAGGGCCGGCCGTTCCAGTGCCTGCAGTGCCCCGCGGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGTCTCAAGAGATTCGCGCAAAAGTCTACACTCAACATTCACAAACGAACGCACACAGTGCAAGGGCGTCCCTACCAGTGCATGGAGTGCCCGGCGGCGTTCACCTGCAAGCCGTACCTCGAGATCCACATGCGAACCCACACCGGCGAGCGCCCCTTCGAGTGCGACGTCTGTTACAAGCGGTTCACGCAGAAGTCCACGCTCAACATTCACAAGCGCATACACACCGGTGAACGTCCATACGCGTGTGATATATGTCAGAAAAGATTCGCAGTGAAGAGTTATGTGACAGCACACAGATGGTCGCACGTGGCCGACAAGCCTCTCAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTTCACATCCGCACGCATACGGCCGGCTCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGAGGGACAGCTATCTCATACGCCACCACAACCGCGTGCACCGCGGCGAGACGCACAGCAACGTGTCGGCCAACAGCATCGGCGGCCTCGGCAGCGTCGCCGCCAACAACGCAGGAGGGAACTACGACTCCGCGGCCGTTTGTGACTTAAGTTTCGTCCCGATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCCATGCAGGACTCCAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATCTCGTCGCCCCCTCCGCCGCACACGCCCACGCCTCAGCCGCAGATGTCGGGCTCCATGCACCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYSHGGVHGGGSLVRSESHLLGLGQHPEDSKDSLAHPHQDMLHQQQDMQHDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVTNGSQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYQCELCLMRFTQSSSLNRHKKTHTEEHRRALLAKERPYQCHVCYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICYMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRGETHSNVSANSIGGLGSVAANNAGGNYDSAAVCDLSFVPMVNRYMTSQGTQVSMQDSSKMSAMSPQSIASISSPPPPHTPTPQPQMSGSMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
-
80% Identity
-