Pxyl004851.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000564.1:1173035-1184178[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.11 1.6e+03 -1.2 0.6 68 75 74 81 27 111 0.52 2 2 2.6e-20 3.8e-16 59.9 8.9 1 44 125 168 125 177 0.92
Sequence Information
- Coding Sequence
- ATGGGCCGGCGCTCCGAGCTGGTGACGTCGGACAACAGCGACGACAGCGGCGACGCCTTCACCGACGGGGACTTCGGGGACTCCGACGAGGACACCACGGTCGTGGAGCGCTCGCCCGCAAGCGGCAACCTTCACGAAACAGTCAACACGACCTTCAACAAGTCAATGGCTGAGACGAACGGCATTAGCAACGGCTCCTACGATAAAGGCAACAACTACAGCCGCCAGAGCAGCTTCGGCAGCCTCAAAAGTGGCAAATCCGGCTCCTCGAATGGATTCAATAGCAAAGACGAATACGACAGCATTCGCAGGGACTCGCATGGAGACCTGAACCCGTCCATCGTCGGCATCATCGGCGGACAACACTCTCATGCGGAGCAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGAACAATGCCGACAAGGCGTATGACATGTACGCGGGGAAGACAGGTGGGTACCAGGGGAGGATGACTTGTTAG
- Protein Sequence
- MGRRSELVTSDNSDDSGDAFTDGDFGDSDEDTTVVERSPASGNLHETVNTTFNKSMAETNGISNGSYDKGNNYSRQSSFGSLKSGKSGSSNGFNSKDEYDSIRRDSHGDLNPSIVGIIGGQHSHAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYAGKTGGYQGRMTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -