Pxyl004850.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000564.1:1165967-1173009[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.2e-09 0.0001 22.4 0.3 19 44 6 31 4 44 0.89 2 3 1.8e-63 2.6e-59 201.7 18.5 18 280 80 339 78 349 0.88 3 3 1.3 1.9e+04 -4.8 10.1 119 170 359 410 351 422 0.69
Sequence Information
- Coding Sequence
- ATGAAGTTGTATCAACGCATGCACGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGAACAATGCCGACAAGTCGTATGATATGTACGCGGGGAAGACAGGTGAGCGAGGGTACCAGGGTGGGAGGGGTGTTAGGAGATGTGTCTTTGATGGCCATGGACATTTACCTATAAGTGGGAAGAAGGGTGAATGGTCTGGGCACCAGCGGAGGATGGTTGTTAAAGTACCATCTGGTTGTCTGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGAACAATGCCGACAAGACGTATGACATGTACGCGGGGAAGACAGAGACGGCGGTGCGGCGCGGCGGCGCGCGGCTGGCGGCGCTCGGCCCGGGCCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCGGTCGACGACAGCTTCAGCCTCAAGGACCTTAGGCACGAACTGAAAGAAGTATCGGAGAAGTTCCGCGCGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTGCGGTACCAGCTGGAGCAGCTGCGCGATCAGGCCGAGGAGCAGCGCGAGGCCGCCGCGCAGCTGCAGAGAGAACACAAAGAGAAATGCTCAGCGCACGAGCGTTTAAAACGCGAGCACGCTTCCCTAGACCGGGAGTTACTATCCGCTCGCGACGCCATCTTAGCCCGCGACGCGGCGGCGGCGGCGGCGGGCCGGGCGTTTGTGGAAGCTACAGGGGACGTGGCCGAGCTGGCGGGAAGCGCCGTGGGCAGCGTGCCCGCGCTCGCGCTCGTGTCGAGAGAGTCCGAGGAGATGTTGAATGATGCTGGGGAGGGGACGCTTGACGTGCGGTTGCAGAAGCTGGTGACGTCACGACAGGAGCTGGAGGCGGAGGTGCGCCGGCTGAAGCTGCAGTTGAACGACGAGCGAGCGGCCCGAGTCAACGGAGCCAGCGGGCAGGACTGCGAGAGCGACTTGGAAGTGACCCGCAAGAGCCTGGCGGAGGCGAAGGCGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGGCGCGGCGGTGGCGCGGCTCGAGGCGCAAGTGGCGAGACTAAGAGCCAGGCAGGAGGGGCAGGACGAGCACGAACATGCCTTGAAGCAGGAGCGGAGACGGCTGCAGAGAGAGGCGCGAGAAGCATTGAACCGCGTGGAAGAGCTAGAAACAGAGAACAACCATTTAACAAAACGACTAGACAAACTGAAGAATGCCAAGTCTGCACTTCTAAAGGAGCTGTGA
- Protein Sequence
- MKLYQRMHELERQQREQENNADKSYDMYAGKTGERGYQGGRGVRRCVFDGHGHLPISGKKGEWSGHQRRMVVKVPSGCLIRMRELERQQREQENNADKTYDMYAGKTETAVRRGGARLAALGPGLHSPRRSSEDSVDDSFSLKDLRHELKEVSEKFRAAMILNAQLDNDKAALRYQLEQLRDQAEEQREAAAQLQREHKEKCSAHERLKREHASLDRELLSARDAILARDAAAAAAGRAFVEATGDVAELAGSAVGSVPALALVSRESEEMLNDAGEGTLDVRLQKLVTSRQELEAEVRRLKLQLNDERAARVNGASGQDCESDLEVTRKSLAEAKARAARAEAEAALQGAAVARLEAQVARLRARQEGQDEHEHALKQERRRLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -