Pint017319.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050491.1:152330-156133[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.19 4.1e+03 -1.7 0.2 25 33 5 13 3 16 0.88 2 10 0.00028 6 7.3 0.7 25 40 45 60 41 66 0.87 3 10 9.6e-06 0.21 12.0 0.3 21 47 221 247 204 254 0.86 4 10 0.11 2.4e+03 -1.0 0.1 21 40 249 268 245 275 0.77 5 10 0.00028 6.1 7.3 0.0 21 47 277 303 263 308 0.84 6 10 0.00043 9.4 6.7 0.0 21 51 305 335 302 336 0.87 7 10 3.8e-06 0.082 13.3 0.1 21 47 333 359 331 365 0.87 8 10 0.08 1.7e+03 -0.5 0.1 21 44 361 384 357 392 0.76 9 10 0.057 1.2e+03 -0.1 0.1 21 44 389 412 382 416 0.81 10 10 0.0015 33 5.0 0.0 21 45 417 441 410 444 0.90
Sequence Information
- Coding Sequence
- ATGGCGTCCGTCGCTGCTTGCCGTGTTTGTCTTGCTGTGGACGCGAGACTGGTGACCATTCCCGTCTCCCTGAAGCTGGTATACGAAAAGCTTACCAGTACCACTCTGCACACACTGGACGGGCGGCCCGTGTCTGCCTGCTACATCTGCTACGCTCAGCTCCGCAAGTGTCGCAGGCTGATGCTCACCTCGCTCAGGGCTGAGGCTCTGCTTACTGAAATGTTATATTCACATTCACGGATAACTGACAAATTGTTGTCAGAAATTGACCGCAGCTCTGTGGGGCTGTGTGGATCACTGACCATCACTAAGAATGACGGCTACGACATCATTCCAGACTTTGTCGAGGTACAGGTCAAGGTGGAACACGATGTCACTACAACTAAATCTGAAAAGGCTATCAAATGGGACTCGGACGATGACAATGACCCTATAAGTGTAGCACATTCACCAAGCAATAAGGATTTGACAGTGAAAAGAGAGGAGGAAGATCCAGCAACATCTGGGGCTGACAGGAAAGCTGAAGGCTCAACAAGCAAAACCAAACGGCGTAAGTCCCGACGGGACTCGCCAACAGCGCCCCGACGGCACCAGTGCAAAGTTTGTCAGCGACGATTCAAACGGCATTCCGCCATGATGGTCCATGCCAGAACACACACCGGCGAGAAACCTTACCAGTGCCACATCTGTCACCTTCAGTTCAACCAAACAGGGAATCTGTTGAGGCATTTACGTACTCACACTGGTGAGAAACCTTACGAATGTAACGTGTGTCAACGTAGATTTACCCAAAAAAATGCTTTGTTAAGCCACTCGACGTCTCACACTGGTGAGAAACCTTatcaatgtaatatttgtCCTAAACGCTTTGGTCAGAATGGTGCTTTGCGTAACCATTTAAAGACCCACACTGGTGAGAAACCGTTCGAATGTAATGTTTGTCAAAAACGCTTTGTCACAAGCAGTAATTTGCAATCGCATTTGAAAATTCACACCGGCGAGAAACCTTTTGAATGTAATATTTGCCAGAAGCAGTTCCGTCAGAGCGTCACTTTGCGTTTGCATTTAAAGACTCACACTGGTGAGAAACCTTTCCAGTGTAGCGTGTGCCCGCGTCGGTTCAATCAGAACATTCACTTGATAGCGCACATGAGAACTCACACGGGTGAGAAACCTTTTGAATGTCAAGTGTGTTTACGTAGGTATAGTCAAAAGACAGATTTGTTGAATCACGTGAGAACTCACACCGGTGAGAAACCCTTCGCGTGTGACGTGTGTCCTCATTGGTCTAGCTCTAAAAGGAACTTGTTGAAGCATCTAAAATCTCACAGCGAGAAAGTTTAA
- Protein Sequence
- MASVAACRVCLAVDARLVTIPVSLKLVYEKLTSTTLHTLDGRPVSACYICYAQLRKCRRLMLTSLRAEALLTEMLYSHSRITDKLLSEIDRSSVGLCGSLTITKNDGYDIIPDFVEVQVKVEHDVTTTKSEKAIKWDSDDDNDPISVAHSPSNKDLTVKREEEDPATSGADRKAEGSTSKTKRRKSRRDSPTAPRRHQCKVCQRRFKRHSAMMVHARTHTGEKPYQCHICHLQFNQTGNLLRHLRTHTGEKPYECNVCQRRFTQKNALLSHSTSHTGEKPYQCNICPKRFGQNGALRNHLKTHTGEKPFECNVCQKRFVTSSNLQSHLKIHTGEKPFECNICQKQFRQSVTLRLHLKTHTGEKPFQCSVCPRRFNQNIHLIAHMRTHTGEKPFECQVCLRRYSQKTDLLNHVRTHTGEKPFACDVCPHWSSSKRNLLKHLKSHSEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220841;
- 90% Identity
- iTF_01220841;
- 80% Identity
- iTF_01220841;