Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050477.1:3217877-3225414[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.007 0.41 11.5 2.7 1 23 285 307 285 307 0.96

2 12 7.8e-05 0.0045 17.6 1.3 2 23 315 336 314 336 0.97

3 12 0.0034 0.2 12.5 0.8 1 23 340 362 340 362 0.98

4 12 0.00037 0.021 15.5 1.2 1 23 367 390 367 390 0.98

5 12 0.00054 0.031 15.0 0.2 1 23 394 417 394 417 0.95

6 12 0.0037 0.21 12.4 0.3 2 20 438 456 438 462 0.93

7 12 0.00071 0.041 14.6 0.0 3 23 472 493 472 493 0.95

8 12 0.35 20 6.1 0.3 3 23 514 535 513 535 0.95

9 12 1e-05 0.00058 20.4 0.5 1 23 546 568 546 568 0.99

10 12 4.7e-06 0.00027 21.5 3.8 1 23 574 596 574 596 0.99

11 12 0.00011 0.0063 17.2 2.0 1 23 602 624 602 624 0.97

12 12 1.4e-05 0.00079 20.0 0.3 1 23 630 653 630 653 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.007	0.41	11.5	2.7	1	23	285	307	285	307	0.96
2	12	7.8e-05	0.0045	17.6	1.3	2	23	315	336	314	336	0.97
3	12	0.0034	0.2	12.5	0.8	1	23	340	362	340	362	0.98
4	12	0.00037	0.021	15.5	1.2	1	23	367	390	367	390	0.98
5	12	0.00054	0.031	15.0	0.2	1	23	394	417	394	417	0.95
6	12	0.0037	0.21	12.4	0.3	2	20	438	456	438	462	0.93
7	12	0.00071	0.041	14.6	0.0	3	23	472	493	472	493	0.95
8	12	0.35	20	6.1	0.3	3	23	514	535	513	535	0.95
9	12	1e-05	0.00058	20.4	0.5	1	23	546	568	546	568	0.99
10	12	4.7e-06	0.00027	21.5	3.8	1	23	574	596	574	596	0.99
11	12	0.00011	0.0063	17.2	2.0	1	23	602	624	602	624	0.97
12	12	1.4e-05	0.00079	20.0	0.3	1	23	630	653	630	653	0.98

Sequence Information

Coding Sequence: ATggaagacaataaaatatgcagAGTGTGCCTCATAATGGGTGTAAAGATGTATGACGCAAAGAGTTATCccatgaaaaattatttagatgCCATAGCTGGAGCTACTcctCTTGGAGAAATGCATCTGCCAACATTTATTTGCTATCAGTGTGGGGCTCtagcacaaaaatattttttcttcaaagagAAATGTATCCACGGGCAAACTGCCTTGTTTGATATGCTTAGTGTGCATGGAAGGGTTGATGTTACTGAAATCCCACAACTAAGGAAGTTCTTCAAATTAATATCCCCAATATGTCTAGTTGATCAGATTAACTTTATTGACTGTTGTCACGGGGATATATCAAAAGGTACCAATGAATCTGCAAAGGAAGAAATTGTTGCTGTTAAATATGAGCCATATGAAGATAGCTCCATTCCTCTCCCCGAAACACTAGAAGATGATTTGTATGAACATATTAAAGATGAAGATGGGTATAAATATGAAGAGTTCTTCAACTCGGTGTCAAGTGATGATGAGCCACTGTCAACACACAAGAGAAATAAGACTGAGGAAAATCAAAGGGTGGAGCTAACGGAAGAATTACTTACTGAAGTCCCAGTGAAGCGCAAACGCGGTCGGCCGAGAAAGGGCGAAGTCCAAGCAAAGTCGGGCGAAGCAAACACATGCCCGAAACCTCAACGTAAAAGGAAAGCCAGGCGAAGGGTAACTGACAATACTGGTGGCGTTTCCGAAGGGGAAGATATAGATTTGGAACAATATGTcgaaattattcatttaaccGAAGAGGAGCAGATACAAGAGATAGAGAAGCGGAAAGAGTCGTCCAACTACCAAAATGCGGCGTTCCAATGCAACTTTTGTTATAAAGGGTTCATCGACGCGCAGGCGTTTAAGCACCACAGCGCCAAGCACGACCCCAGTGCAGGCAACATTAAGTGTCCAATTTGTAAGATTCGGTTCAAGAACAAGCGCGCATACATGAAACATTACATGAACCACGAGAAGAAGTACCAGTGTAAGGCGTGTCCTTACGTCTCCAAAACATCaaCACAAGCGAAGCAGCATCAGAGATGGCACAAAGGTGTGACTTACAAGTGTCAGTATTGTGATGAAGTCTCCACGAAATGGACATCATACCTGAGTCATGTGCGAATGAAGCACCCCTCGGAGTTCATATGCGGCGTTTGTGGATACTCATTTGTTAGCAAACTAGGGCTCACCATGCATCGGACTATGATGCACAAAGGAATTGTGGAAAGCCAAGAACTTGAAGGGGAGGCCAAAGAAGGTGAATCTAAACCCTACTGCTCAGTCTGTGACGTCAAGTTCGTCTCCGAAGAGGCATTCAAACGACACATGGTCATGTCTACGAAACACACAAAGACTAACGAAGACAGCCACGGCTGCCGCTCGTGCGGCGAGGCGTTCCCGTCGGCGGAGACGCTGCGCGCGCACCAGCGCGCGGCGCACGCGCGCAAGCGCCCGCGCAACTACGGCAAGCGGCCGCCGCCCTACTGCTGGCCCGCGCCCTGCACGCATTGCGGTGAACAAGTGCCAAGTGGGAGAGCGTACTGGACACATTTCCGTCGCGCACATCCTGGTCTCCCCTACCCCGTGCAAAAGGACTATGTGTGTGACGTCTGCGGGAAGAGTTTCCGGGGTAATGCCTTCCTAGTGTACCACAAACGCACGCACACAGACGAGCGCGCGTACAAATGTTCGCTCTGCCCCAAAGCGTTCCACAACCGCACGAACCTGCAGATGCACCAGAAGACCCACTCAGACCACCGTCCGCACCCGTGTACAGTCTGCTTCAAGGCTTTCAAGTCCAAAGGAGCCTTAGATAGGCATTTTCGAagTCACACTGGCGTGAAACCATACGAGTGTGAAGTTTGCGGCAAAGCGTTCAACCAATCAAACAGCCGCAAACTTCACGTGCGCACGGTACACTTGCGGCAACCCGCGCCTTACGTCAGCCGCAACAGAGACAAGCGGAGAGCCCCGCCCGAACACTTCTGA
Protein Sequence: MEDNKICRVCLIMGVKMYDAKSYPMKNYLDAIAGATPLGEMHLPTFICYQCGALAQKYFFFKEKCIHGQTALFDMLSVHGRVDVTEIPQLRKFFKLISPICLVDQINFIDCCHGDISKGTNESAKEEIVAVKYEPYEDSSIPLPETLEDDLYEHIKDEDGYKYEEFFNSVSSDDEPLSTHKRNKTEENQRVELTEELLTEVPVKRKRGRPRKGEVQAKSGEANTCPKPQRKRKARRRVTDNTGGVSEGEDIDLEQYVEIIHLTEEEQIQEIEKRKESSNYQNAAFQCNFCYKGFIDAQAFKHHSAKHDPSAGNIKCPICKIRFKNKRAYMKHYMNHEKKYQCKACPYVSKTSTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRMKHPSEFICGVCGYSFVSKLGLTMHRTMMHKGIVESQELEGEAKEGESKPYCSVCDVKFVSEEAFKRHMVMSTKHTKTNEDSHGCRSCGEAFPSAETLRAHQRAAHARKRPRNYGKRPPPYCWPAPCTHCGEQVPSGRAYWTHFRRAHPGLPYPVQKDYVCDVCGKSFRGNAFLVYHKRTHTDERAYKCSLCPKAFHNRTNLQMHQKTHSDHRPHPCTVCFKAFKSKGALDRHFRSHTGVKPYECEVCGKAFNQSNSRKLHVRTVHLRQPAPYVSRNRDKRRAPPEHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00652013;
90% Identity: -
80% Identity: -