Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031584.1:13868448-13881532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 1.4 11.0 1.6 1 23 247 269 247 269 0.96

2 12 0.00014 0.017 17.0 1.0 2 23 277 298 276 298 0.96

3 12 0.0037 0.46 12.6 0.8 1 23 302 324 302 324 0.98

4 12 0.0026 0.32 13.0 2.5 1 23 329 352 329 352 0.98

5 12 0.0024 0.3 13.2 0.1 1 23 356 379 356 379 0.95

6 12 0.0036 0.44 12.6 0.3 2 20 400 418 400 424 0.93

7 12 0.14 17 7.6 0.0 3 23 434 455 434 455 0.92

8 12 0.43 52 6.1 0.2 3 23 476 497 475 497 0.95

9 12 6.1e-06 0.00075 21.3 0.5 1 23 508 530 508 530 0.99

10 12 5.2e-06 0.00063 21.6 3.8 1 23 536 558 536 558 0.99

11 12 0.00012 0.015 17.3 2.0 1 23 564 586 564 586 0.97

12 12 1.5e-05 0.0018 20.1 0.3 1 23 592 615 592 615 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	1.4	11.0	1.6	1	23	247	269	247	269	0.96
2	12	0.00014	0.017	17.0	1.0	2	23	277	298	276	298	0.96
3	12	0.0037	0.46	12.6	0.8	1	23	302	324	302	324	0.98
4	12	0.0026	0.32	13.0	2.5	1	23	329	352	329	352	0.98
5	12	0.0024	0.3	13.2	0.1	1	23	356	379	356	379	0.95
6	12	0.0036	0.44	12.6	0.3	2	20	400	418	400	424	0.93
7	12	0.14	17	7.6	0.0	3	23	434	455	434	455	0.92
8	12	0.43	52	6.1	0.2	3	23	476	497	475	497	0.95
9	12	6.1e-06	0.00075	21.3	0.5	1	23	508	530	508	530	0.99
10	12	5.2e-06	0.00063	21.6	3.8	1	23	536	558	536	558	0.99
11	12	0.00012	0.015	17.3	2.0	1	23	564	586	564	586	0.97
12	12	1.5e-05	0.0018	20.1	0.3	1	23	592	615	592	615	0.98

Sequence Information

Coding Sequence: ATGCTTCTGCCAACATACATTTGCTATGAGTGTGAAGCTCtggctaaaaaatattttttcttcaagGAGAGATGTATCAAGGGGCAGGCAGCCTTGTTTGATATGCTCAGCATACATGGAAAGGTCAATGTAGCTGAAATCGCCCAACTAAGGAAGACCTTCAAATTATCATCCACCTTACGTCTTGTTGTTCAGACTAACTTGATTGACTGTTGTTATGATGAATCAAACCGTCGCAAAGAATCTAGAAAGAAAGATATTTTTGATGTCAAAGACGAGCCCTATGAGGACAGTTCAATTCAGTTCGCTGAGACACTAGAAGCGGATGATCTGTTAGAGACTATCAAAGAAGAAGATGATTATAAATTCGAAGTGTTCTTGAACTCGGCTGAGTCAGTGTCAAGTGATGATGAGCCACTGTCAATGCACAAGAGAAATAAgactgaaaaagaaaataaaaaggaGTCTTTAGACGAAATACCTAGTGTCCCAGTGAAGCGCAAGCGCGGCCGGCCGAGGAAAGACGAAGTTCTTCCGAAGGCGGACGGAAGCGATCCGCAACACAAACCGCCGCGCAAGCGCACGGTCCGCCGGAGGGTCACCGACAACACCGGCGGCGTTTCCGATCAGGAGGACTTCGATTTGGAGCAATATGTCGAAATTATACATTTAACTCCCGAGGAACAGATACAGGAAATAGAAAAGAGGAAGGAGTCGTCGAACTACCAGAACTCAGCGTTCCAATGCAACTTCTGCTACAAAGGATTCATAGACGCGCAAGCCTGGAAGCATCATAGCGCCAAACACGACCCCAGTGCGGGCAACATAAGTTGTCCTATTTGTAAGATTCGGTTCAAGAACAAGCGAGCTTACATGAAGCATTACATGAACCACGAGAAGAAATACCAGTGCAAAGCGTGTCCCTATGTCTCCAAAACATCaacacAAGCGAAGCAGCATCAAAGGTGGCACAAAGGCGTAACGTACAAGTGTCAGCATTGTGACGAGATCTCAACGAAATGGACATCATACCTCAGTCATGTCCGAATGAAGCACCCATCCGAGTTTATATGCGGCGTTTGCGGGTATTCATTTGTTAGCCGCCTGGGGCTTGCCATGCACCGGACTATGATGCATAAGGGAGTAGAGGAAAATCAAGAGCCAGAAGGGGAGGTCAAAGAAGACGATTCGAGGCCATACTGCTCAGTTTGTGACGTAAGGTTCGTCTCTGAAGAGGCGTTCAAGCGACATATGGTCATGTCCACGAAGCACACCAAGACTGATGAAGAAAGCCACGGCTGCCGCGCGTGCGGCTCCCGCTTCCCGTCGGCGGAGGCGCTGCGCGCGCACGGCCGCGCTGCGCACGCGCGCCGCCGCCCCAAGAACTACGGCAAGCGGCCGCCGCCGTACTCCTTCCCTGCGCCTTGCGAGCACTGCGGCGAACAAGTGCCAAGTGGGCGAGCGTACTGGACCCACTTCCGGCGCGCGCACCCCGGCCTGCCCTACCCCGTGCGCAAGGACTACGTGTGCGACATCTGCGGCAAGAGCTTCCGGGGCAACGCCTTCTTAGTGTACCACAAACGCACACACACGGACGAGCGCGCGTACAAATGTTCGCTTTGTCCCAAAGCGTTCCACAACCGGACCAACTTGCAAATGCACCAAAAGACCCACTCTGACCATCGACCACATCCTTGTACAGTCTGCTTCAAGGCGTTCAAGTCCAAAGGAGCCTTGGACAGGCATTTCCGAAGTCACACGGGCGTGAAGCCGTACGAGTGTGAAGTTTGCGGCAAGGCGTTCAACCAGTCCAACAGCCGCAAACTTCACGTGCGAACTGTACACTTGCGACAACCTGCGCCTTACGTCAGCCGCAACAGAGATAAGCGGAGACCACCCCCTGAACACTTCTGA
Protein Sequence: MLLPTYICYECEALAKKYFFFKERCIKGQAALFDMLSIHGKVNVAEIAQLRKTFKLSSTLRLVVQTNLIDCCYDESNRRKESRKKDIFDVKDEPYEDSSIQFAETLEADDLLETIKEEDDYKFEVFLNSAESVSSDDEPLSMHKRNKTEKENKKESLDEIPSVPVKRKRGRPRKDEVLPKADGSDPQHKPPRKRTVRRRVTDNTGGVSDQEDFDLEQYVEIIHLTPEEQIQEIEKRKESSNYQNSAFQCNFCYKGFIDAQAWKHHSAKHDPSAGNISCPICKIRFKNKRAYMKHYMNHEKKYQCKACPYVSKTSTQAKQHQRWHKGVTYKCQHCDEISTKWTSYLSHVRMKHPSEFICGVCGYSFVSRLGLAMHRTMMHKGVEENQEPEGEVKEDDSRPYCSVCDVRFVSEEAFKRHMVMSTKHTKTDEESHGCRACGSRFPSAEALRAHGRAAHARRRPKNYGKRPPPYSFPAPCEHCGEQVPSGRAYWTHFRRAHPGLPYPVRKDYVCDICGKSFRGNAFLVYHKRTHTDERAYKCSLCPKAFHNRTNLQMHQKTHSDHRPHPCTVCFKAFKSKGALDRHFRSHTGVKPYECEVCGKAFNQSNSRKLHVRTVHLRQPAPYVSRNRDKRRPPPEHF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01220852;
90% Identity: -
80% Identity: -