Basic Information

Insect: Plodia interpunctella
Gene Symbol: ham
Assembly: GCA_027563975.2
Location: CM050476.1:4212000-4232666[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 2.1 9.2 0.0 2 23 139 161 139 161 0.94

2 9 0.00072 0.042 14.6 0.6 1 23 168 191 168 191 0.93

3 9 1.9e-08 1.1e-06 29.0 0.1 1 23 197 220 197 220 0.96

4 9 1.6e-06 9.2e-05 22.9 1.7 1 23 226 248 226 248 0.95

5 9 5.6e-05 0.0033 18.1 6.1 1 23 254 276 254 276 0.99

6 9 0.00011 0.0067 17.1 0.4 2 21 284 303 283 304 0.94

7 9 1.4e-08 7.8e-07 29.5 0.7 1 23 692 714 692 714 0.98

8 9 4.9e-07 2.8e-05 24.6 1.7 1 23 720 743 720 743 0.97

9 9 5.3e-06 0.00031 21.3 3.3 1 23 749 771 749 771 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	2.1	9.2	0.0	2	23	139	161	139	161	0.94
2	9	0.00072	0.042	14.6	0.6	1	23	168	191	168	191	0.93
3	9	1.9e-08	1.1e-06	29.0	0.1	1	23	197	220	197	220	0.96
4	9	1.6e-06	9.2e-05	22.9	1.7	1	23	226	248	226	248	0.95
5	9	5.6e-05	0.0033	18.1	6.1	1	23	254	276	254	276	0.99
6	9	0.00011	0.0067	17.1	0.4	2	21	284	303	283	304	0.94
7	9	1.4e-08	7.8e-07	29.5	0.7	1	23	692	714	692	714	0.98
8	9	4.9e-07	2.8e-05	24.6	1.7	1	23	720	743	720	743	0.97
9	9	5.3e-06	0.00031	21.3	3.3	1	23	749	771	749	771	0.98

Sequence Information

Coding Sequence: ATGGCACACTACACTGTTTTGGCAGTTTTCCTTGCAGTAAAAAAATTCACACACAAACTAAGCAATGTCTACGTTCAAGGAAGTATACTGATGCTTCCTTGGGACAAAAAGCACGATGCTCAAGTGGTCGGCAAGAACGGCATTCGGGGATGGCTGGACGGCACTACAGAAAAAGGAAACTGGTTGAAACTGATCCGCTATACAAACTACACCCACGACGCCAACTTACAGCATACACTGCACGCTGGTGAAGTATGGTACAAGGTGATCCGGGATATCTCCTCAGGCCAGGAGTTGTTGCTGGGACCCAGGACTCCACTGCCCTTGCAGGATGTGATGCCCTCTAGCGAACACCAGAGTTCCAGTAACAAATTCTCGCAAGCAGAAGAGGAAGACAGAGAGGATACAGAGCCGAGGTGTTCCTTCTGCGACGCGCCCTTCCCTAACATCGATGCTCTCGACCGTCACCTGATCCAGGCGCACGGGCAAACACCCGGTGCATTTCATTGCGAGCTCTGCAACCGTGCATACAGCTCCCGAGCATTGCTGCTGCGACACCGGGCCCTAGCCCACACTGACATCAGGAAATATCCTTGCGAGAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTGGGCGCGCGCAGCCACGCGTGTCCAGAGTGCGGGAAGACCTTCGCGACCTCCTCGGGCCTCAAGCAGCACACTCACATCCACTCTAGCGTCAAGCCGTTCCAGTGCAAAGTCTGCTTTAAGGCATACACCCAGTTTTCTAACTTGTGTCGTCACAAGCGAATGCACATCGCCTGTAGAGCCCGCGTTGAGTGCGGGAAATGCGGCCAGTCCTTCACTTCCTATGCCTCGCTCACTAAACACAAGCGGTTCTGTGACTGCCAGAGTGCCAGCGTCAACCTCCGAGGCCAGATGCACCAAGGAATACCGCAGATACCGCCCCTTCCAAACGTCGGGATGAATAATCCAAATAATCCAAACCCGTTCCCACTATACAGAGGACCTACACTGCCATTACCGTACAATTCTTACTACCCAGCATTATTTTCCGCTGCGGCAGCTGCTTGTCAACCGGAGTTTTTGAACCCACTGCTTTTCAATGTTCAAGGAAGACTGGCAATGGAACATGACATTGCCTTATCAAATGCAAATATGGCTAAACAAGAAGATCGAATGTCTGTTAAAAGTATTGATAGCTCAACATCATtagatgataaaaaaaataaagatgcGGAGTTTGAGAACAGGAGAAATAATGACAGTTCAGACAGAACTACACCAAATAAAACACAGAGTCTGTACTCTAAACAATCACCACGGTCATCTGAAGATATATCTCAGCCACGACCCTCGCCAGTTATGGCTGTATCATCTCCCATCGTACCATTCAATTTTGCAAGAGAAGATTTAAAAGGAAAGTCTCCCTTTAATTTCTCATTGAAActcaataataatgaaataaaaggaCACAAATCAGTTTCTCCTTCGCCTAAAGATTTGTCAAAAAGTATTACAAGTGAGGATAAGAATTCAGAATATTCTGATGTAGAAGACGATCCTAAGAAAGATTTAGGCGATCAACCGTTAGATTTATCGATTTCAAGAAAACAAACTGACATGGATTCTGAAGTAAAGAATAATGATAGTTCCTTTCGCAACTTATCAGTTAAGTCTTATTCGCCACCTGAAAGTCCCACAGAGAGAAGCAAAACTCCTGAAAATGACACAACAGATGTAGACGTAGAAGGCGTTGATACTAAACGCGAGGACTCACCTTCAATGGTCTCTCAGCCTCTAGCGTTCCCAATGCCCGTCCACCCTCAGCACAACAACATCATTGATGCCATGTATCGACCTAGGTTTCCTCCCTTTCATTCAGCAGACGCGCTTTTGAGTTCCACACACTCGCCTTACGTACCAAGtccgtttaattttttatcccCACTTCTCGGTACTGATGGTCCGGAGCGGCAAACGAGCGCTTACGCAAAATTTCGTGAACTGAGTGCCGGTCCTGGTAAACTACGTGACCGTTACGCTTGCAAATTCTGTGGAAAAGTATTTCCTCGCAGCGCTAATCTCACACGCCATCTCAGGACACACACAGGGGAGCAGCCTTACAAATGTAAGTACTGCGAGCGTTCCTTTTCGATTTCGTCCAATCTGCAGCGTCACGTGAGGAACATTCACAACAAAGAGAGACCGTTTAGATGTCCGTTATGTGACAGGTGTTTCGGCCAGCAGACAAATCTGGACCGGCACCTGAAGAAGCACGAAGCGGAGGGTGGAGACTCACCGAGTTCAGCGGATACAGAACGAGAAGATGCATGCTTTGATGACATCAGGTCTTTTATGGGGAAGGTGACCTGTTCCCCCAGCGCGGGCTCGCCGCCGCCCGCGTCCCCGCGCGTCGCGCCGCGCCACTCGCTCGCGATCTCCACATAG
Protein Sequence: MAHYTVLAVFLAVKKFTHKLSNVYVQGSILMLPWDKKHDAQVVGKNGIRGWLDGTTEKGNWLKLIRYTNYTHDANLQHTLHAGEVWYKVIRDISSGQELLLGPRTPLPLQDVMPSSEHQSSSNKFSQAEEEDREDTEPRCSFCDAPFPNIDALDRHLIQAHGQTPGAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHIACRARVECGKCGQSFTSYASLTKHKRFCDCQSASVNLRGQMHQGIPQIPPLPNVGMNNPNNPNPFPLYRGPTLPLPYNSYYPALFSAAAAACQPEFLNPLLFNVQGRLAMEHDIALSNANMAKQEDRMSVKSIDSSTSLDDKKNKDAEFENRRNNDSSDRTTPNKTQSLYSKQSPRSSEDISQPRPSPVMAVSSPIVPFNFAREDLKGKSPFNFSLKLNNNEIKGHKSVSPSPKDLSKSITSEDKNSEYSDVEDDPKKDLGDQPLDLSISRKQTDMDSEVKNNDSSFRNLSVKSYSPPESPTERSKTPENDTTDVDVEGVDTKREDSPSMVSQPLAFPMPVHPQHNNIIDAMYRPRFPPFHSADALLSSTHSPYVPSPFNFLSPLLGTDGPERQTSAYAKFRELSAGPGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDACFDDIRSFMGKVTCSPSAGSPPPASPRVAPRHSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013328;
90% Identity: iTF_00640691;
80% Identity: iTF_01220817;