Basic Information

Insect: Plodia interpunctella
Gene Symbol: ham
Assembly: GCA_027563975.2
Location: CM050476.1:4212000-4232666[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.53 7.6e+02 0.5 0.0 13 43 134 161 125 162 0.76

2 8 0.024 35 4.8 1.8 16 43 196 220 163 221 0.78

3 8 0.15 2.2e+02 2.2 0.1 19 38 228 244 225 249 0.87

4 8 0.57 8.3e+02 0.4 4.2 4 38 242 272 239 277 0.79

5 8 0.48 6.9e+02 0.6 4.3 2 28 268 294 267 301 0.80

6 8 2.2e-05 0.032 14.5 0.1 18 41 693 713 678 715 0.87

7 8 3e-05 0.043 14.1 2.2 17 44 720 744 714 744 0.88

8 8 0.81 1.2e+03 -0.1 0.4 19 41 751 770 745 771 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.53	7.6e+02	0.5	0.0	13	43	134	161	125	162	0.76
2	8	0.024	35	4.8	1.8	16	43	196	220	163	221	0.78
3	8	0.15	2.2e+02	2.2	0.1	19	38	228	244	225	249	0.87
4	8	0.57	8.3e+02	0.4	4.2	4	38	242	272	239	277	0.79
5	8	0.48	6.9e+02	0.6	4.3	2	28	268	294	267	301	0.80
6	8	2.2e-05	0.032	14.5	0.1	18	41	693	713	678	715	0.87
7	8	3e-05	0.043	14.1	2.2	17	44	720	744	714	744	0.88
8	8	0.81	1.2e+03	-0.1	0.4	19	41	751	770	745	771	0.72

Sequence Information

Coding Sequence: ATGGCACACTACACTGTTTTGGCAGTTTTCCTTGCAGTAAAAAAATTCACACACAAACTAAGCAATGTCTACGTTCAAGGAAGTATACTGATGCTTCCTTGGGACAAAAAGCACGATGCTCAAGTGGTCGGCAAGAACGGCATTCGGGGATGGCTGGACGGCACTACAGAAAAAGGAAACTGGTTGAAACTGATCCGCTATACAAACTACACCCACGACGCCAACTTACAGCATACACTGCACGCTGGTGAAGTATGGTACAAGGTGATCCGGGATATCTCCTCAGGCCAGGAGTTGTTGCTGGGACCCAGGACTCCACTGCCCTTGCAGGATGTGATGCCCTCTAGCGAACACCAGAGTTCCAGTAACAAATTCTCGCAAGCAGAAGAGGAAGACAGAGAGGATACAGAGCCGAGGTGTTCCTTCTGCGACGCGCCCTTCCCTAACATCGATGCTCTCGACCGTCACCTGATCCAGGCGCACGGGCAAACACCCGGTGCATTTCATTGCGAGCTCTGCAACCGTGCATACAGCTCCCGAGCATTGCTGCTGCGACACCGGGCCCTAGCCCACACTGACATCAGGAAATATCCTTGCGAGAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTGGGCGCGCGCAGCCACGCGTGTCCAGAGTGCGGGAAGACCTTCGCGACCTCCTCGGGCCTCAAGCAGCACACTCACATCCACTCTAGCGTCAAGCCGTTCCAGTGCAAAGTCTGCTTTAAGGCATACACCCAGTTTTCTAACTTGTGTCGTCACAAGCGAATGCACATCGCCTGTAGAGCCCGCGTTGAGTGCGGGAAATGCGGCCAGTCCTTCACTTCCTATGCCTCGCTCACTAAACACAAGCGGTTCTGTGACTGCCAGAGTGCCAGCGTCAACCTCCGAGGCCAGATGCACCAAGGAATACCGCAGATACCGCCCCTTCCAAACGTCGGGATGAATAATCCAAATAATCCAAACCCGTTCCCACTATACAGAGGACCTACACTGCCATTACCGTACAATTCTTACTACCCAGCATTATTTTCCGCTGCGGCAGCTGCTTGTCAACCGGAGTTTTTGAACCCACTGCTTTTCAATGTTCAAGGAAGACTGGCAATGGAACATGACATTGCCTTATCAAATGCAAATATGGCTAAACAAGAAGATCGAATGTCTGTTAAAAGTATTGATAGCTCAACATCATtagatgataaaaaaaataaagatgcGGAGTTTGAGAACAGGAGAAATAATGACAGTTCAGACAGAACTACACCAAATAAAACACAGAGTCTGTACTCTAAACAATCACCACGGTCATCTGAAGATATATCTCAGCCACGACCCTCGCCAGTTATGGCTGTATCATCTCCCATCGTACCATTCAATTTTGCAAGAGAAGATTTAAAAGGAAAGTCTCCCTTTAATTTCTCATTGAAActcaataataatgaaataaaaggaCACAAATCAGTTTCTCCTTCGCCTAAAGATTTGTCAAAAAGTATTACAAGTGAGGATAAGAATTCAGAATATTCTGATGTAGAAGACGATCCTAAGAAAGATTTAGGCGATCAACCGTTAGATTTATCGATTTCAAGAAAACAAACTGACATGGATTCTGAAGTAAAGAATAATGATAGTTCCTTTCGCAACTTATCAGTTAAGTCTTATTCGCCACCTGAAAGTCCCACAGAGAGAAGCAAAACTCCTGAAAATGACACAACAGATGTAGACGTAGAAGGCGTTGATACTAAACGCGAGGACTCACCTTCAATGGTCTCTCAGCCTCTAGCGTTCCCAATGCCCGTCCACCCTCAGCACAACAACATCATTGATGCCATGTATCGACCTAGGTTTCCTCCCTTTCATTCAGCAGACGCGCTTTTGAGTTCCACACACTCGCCTTACGTACCAAGtccgtttaattttttatcccCACTTCTCGGTACTGATGGTCCGGAGCGGCAAACGAGCGCTTACGCAAAATTTCGTGAACTGAGTGCCGGTCCTGGTAAACTACGTGACCGTTACGCTTGCAAATTCTGTGGAAAAGTATTTCCTCGCAGCGCTAATCTCACACGCCATCTCAGGACACACACAGGGGAGCAGCCTTACAAATGTAAGTACTGCGAGCGTTCCTTTTCGATTTCGTCCAATCTGCAGCGTCACGTGAGGAACATTCACAACAAAGAGAGACCGTTTAGATGTCCGTTATGTGACAGGTGTTTCGGCCAGCAGACAAATCTGGACCGGCACCTGAAGAAGCACGAAGCGGAGGGTGGAGACTCACCGAGTTCAGCGGATACAGAACGAGAAGATGCATGCTTTGATGACATCAGGTCTTTTATGGGGAAGGTGACCTGTTCCCCCAGCGCGGGCTCGCCGCCGCCCGCGTCCCCGCGCGTCGCGCCGCGCCACTCGCTCGCGATCTCCACATAG
Protein Sequence: MAHYTVLAVFLAVKKFTHKLSNVYVQGSILMLPWDKKHDAQVVGKNGIRGWLDGTTEKGNWLKLIRYTNYTHDANLQHTLHAGEVWYKVIRDISSGQELLLGPRTPLPLQDVMPSSEHQSSSNKFSQAEEEDREDTEPRCSFCDAPFPNIDALDRHLIQAHGQTPGAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHIACRARVECGKCGQSFTSYASLTKHKRFCDCQSASVNLRGQMHQGIPQIPPLPNVGMNNPNNPNPFPLYRGPTLPLPYNSYYPALFSAAAAACQPEFLNPLLFNVQGRLAMEHDIALSNANMAKQEDRMSVKSIDSSTSLDDKKNKDAEFENRRNNDSSDRTTPNKTQSLYSKQSPRSSEDISQPRPSPVMAVSSPIVPFNFAREDLKGKSPFNFSLKLNNNEIKGHKSVSPSPKDLSKSITSEDKNSEYSDVEDDPKKDLGDQPLDLSISRKQTDMDSEVKNNDSSFRNLSVKSYSPPESPTERSKTPENDTTDVDVEGVDTKREDSPSMVSQPLAFPMPVHPQHNNIIDAMYRPRFPPFHSADALLSSTHSPYVPSPFNFLSPLLGTDGPERQTSAYAKFRELSAGPGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDACFDDIRSFMGKVTCSPSAGSPPPASPRVAPRHSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013328;
90% Identity: iTF_00640691;
80% Identity: iTF_01220835;