Pint014500.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plodia interpunctella
Gene Symbol
-
Assembly
GCA_027563975.2
Location
CM050483.1:5599406-5611755[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5e-05 0.0029 18.2 5.9 1 23 206 228 206 228 0.98
2 13 2.5e-06 0.00015 22.3 0.2 3 23 242 262 241 262 0.98
3 13 5.5e-05 0.0032 18.1 2.1 2 23 271 292 271 292 0.98
4 13 0.00034 0.02 15.6 2.1 1 23 298 320 298 320 0.98
5 13 6.5e-06 0.00038 21.0 1.4 1 23 326 348 326 348 0.98
6 13 1.8e-05 0.001 19.6 8.4 2 23 355 376 354 376 0.97
7 13 2.3e-05 0.0013 19.3 0.8 1 23 382 404 382 404 0.98
8 13 1.4e-05 0.00079 20.0 1.4 1 23 410 432 410 432 0.98
9 13 0.00016 0.0092 16.7 1.2 1 23 438 460 438 460 0.98
10 13 0.0004 0.023 15.4 1.2 1 23 466 488 466 488 0.97
11 13 0.00064 0.037 14.7 1.5 1 23 494 516 494 516 0.97
12 13 0.00061 0.035 14.8 0.1 5 23 520 538 519 538 0.97
13 13 0.00019 0.011 16.4 3.0 1 23 598 620 598 620 0.99

Sequence Information

Coding Sequence
ATGGCTACTGCGAAATTGCAAAACTTGaagtttgataaaatatgCCGAGCATGTTTGGAAGTAAAAAAAGACATGCGGCCCCTTTTTGAACAATTAACAGCAACGATGCTGATGGGTATATCAAAAGTGCAAgtgtCCGTTGGCGATGGGCTGCCTCCACAGCTGTGCCTGCAATGCGTGCACCAGATCTCCCGGTGCAATGCCTTCAAAGATATGGTGGAGAGGAATGACGTCACACTGCGCGAACTTGCCAGGGTGCGGGCGGAGATGGTCAAGGTGGAGAGGGAATCGAAAGAGAAAATGCTCAATATGAGCTGCCCAGAGCCCGCTTACATCCAGTACATGGAGGTCCCGATCGTCCACAACGCTGGTCAGATGTTGGAGAGTTTCTTCGACACACCGCCGACGACCGCACCGGCTCCTGAACAATGCAGTCCTAAAGATCCGTTGAATACGGACAATGTTGAGGAAGTTAAGCGTCCGCAAAGCGAGCCCCAACCACAGACAGAGCAGGTAGCTTCAAACACAAAAGGCGAAGAAGCGCTAAACTCAGACGAAGAGAGCTACCTACAACTAGTTGTCTTCCAAGCGTCGTCGTCGGTGACCCCTGGCCGTCACGTCTGTAACCTCTGCCACAAGGAGTTCAAAAACGCAAGGTTCCTGAAACAACACATGCGCTCCCACTCCAACTGGATTAAGGCTAATTGCAAGAAGCCGCCTATGTGCCCGATTTGTGAGAGGACTTTTAagGGTCCCGGCATGCTCAAGATGCACATGCGCACGCACGAGGAGCGCCCGCCCAAGCAGCCCACCTGCTCCGTCTGCCAGCGCACCTTCCCCACCAAGACGCTGCTCTACCGCCACAGGCAGACGCACTTCGAACAAAAGACGCACCAGTGCACCGTTTGCGAGAAGAGGTTCTTCAGCGGCTACGCCCTGAGGTCCCACATGGCCAGGCACAGGGGAGAGAGACCCTACGTCTGCTCCACGTGCAACAAGAGCTTCTATAACCCCACCGATTTGAAGGTCCATTTCCGGCTCCACACAGGCGAGAAACCGCTGAAATGTTCAGAATGCAACAAGACCTTCCGCCGGCACTCCACGCTCTGCCAGCACATGAAGAAGCACCGCGGCATACGGAACCACGTGTGCACGGTGTGCAACAAAGGGTTCTATGAAGTGTCCAAACTGAACGCTCATATGAGGGTCCACACAGgcgAGCGTCCATTCGAGTGTCAATTCTGTGAGCGCAAGTTCGCGCAGCAATCGGCTCTGATCTACCACCGGCGCACGCACACGGGGGAGAAGCCATACAGTTGCAAGCTGTGTAACGCCAAATTTACCACGAGCTCAGCGAGAAACAATCACATGGTCACCCATACTGGGAACAAGAGATTCGTATGTCCGATCTGCCTGAAAGGCTGCACGTCCCGCAGCGAGCTGCGCGTGCACTCCAGCAAGCACACGGGCGAGAAGCTGTTCGCGTGCGAGACGTGCGGGCACAGGGTCAGCTCCGCCTCCAGCCTCGCCGTGCATCGCCGGCACCACGCCGGCGGTGTCTGCGGGAAAGGCTACATAGAATCAAGTTCGTACAAAAAACACATGAAAACACACGAAGTGAAAGACCCAGAGTCTTCTAACTCGGAAAACAGTTCAGAAATCAAATCGGACCCGGAACCAAAACCGATACTTCAAATACAAATACCAGTACCCGAAAACCAAGAACCAATGAAGGGTAATATGGAAGTGGCGCAGGCCCAAAGTCCACAGGAATCGCCGCCACAAAAGAGATACAAATGTGGAGTGTGTGTCAAGACCTATATGTATTTGCACAGCTTGAAGAAGCACATGTTAACGCATATACCAcCCGAGCCTACCCAACAACAACAACCaccacaacaacaacaacaacaacaacaaaccCAACAACACGTGCCGCAACAACACCAGCAGATGCAGCAGGTACAACAGGTGCAGCAAGTGCAGgtgcagcagcagcagcagctgCAGCAGCAGGCGGTGCTGCAGGTCGGCAGCGTGCAGCAGCTGGCCGTGCCCATACACGCGCAGCAGTTGCAACAGGGGATCACTGTTTCTGGAGTGGGCCCGCCACACTCGTATCCTGTTATATCGTCAGTCCAGTCTCTACAACTACAGCAAACGCAGCAGCAAGTCAACACGCAACAGCAGCCACAGCAACTGCAAGTCCAAACTATACAAATACATCCGCAACATCAGCCGATACAAATTCacGCGGTGGGCGTGCAGCAAGTGCAACAACAACAATTACACGTCGCCACTTCTTCCTGTCAGACGATGTTGCCCAACATCCTACAGCTGCAGCCGGCAGTGGCAGTGTCTGGGCTGGGCGGGGAGCTGGGCGCGCACCGCATCATCCTGCAGCAGCAGACGGCGCCGCAAGCTGTCTACACCATACACCACTGA
Protein Sequence
MATAKLQNLKFDKICRACLEVKKDMRPLFEQLTATMLMGISKVQVSVGDGLPPQLCLQCVHQISRCNAFKDMVERNDVTLRELARVRAEMVKVERESKEKMLNMSCPEPAYIQYMEVPIVHNAGQMLESFFDTPPTTAPAPEQCSPKDPLNTDNVEEVKRPQSEPQPQTEQVASNTKGEEALNSDEESYLQLVVFQASSSVTPGRHVCNLCHKEFKNARFLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEERPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSTCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYSCKLCNAKFTTSSARNNHMVTHTGNKRFVCPICLKGCTSRSELRVHSSKHTGEKLFACETCGHRVSSASSLAVHRRHHAGGVCGKGYIESSSYKKHMKTHEVKDPESSNSENSSEIKSDPEPKPILQIQIPVPENQEPMKGNMEVAQAQSPQESPPQKRYKCGVCVKTYMYLHSLKKHMLTHIPPEPTQQQQPPQQQQQQQQTQQHVPQQHQQMQQVQQVQQVQVQQQQQLQQQAVLQVGSVQQLAVPIHAQQLQQGITVSGVGPPHSYPVISSVQSLQLQQTQQQVNTQQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPAVAVSGLGGELGAHRIILQQQTAPQAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01302602; iTF_00073035; iTF_00720589; iTF_00012235; iTF_00146638;
90% Identity
-
80% Identity
-