Acon025062.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743126.1:5279744-5293777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.6e-05 0.0048 18.2 5.9 1 23 205 227 205 227 0.98 2 13 2.9e-06 0.00024 22.3 0.2 3 23 241 261 240 261 0.98 3 13 6.2e-05 0.0053 18.1 2.1 2 23 270 291 270 291 0.98 4 13 0.00039 0.033 15.6 2.1 1 23 297 319 297 319 0.98 5 13 4.8e-06 0.00041 21.6 1.1 1 23 325 347 325 347 0.98 6 13 9.2e-05 0.0078 17.6 10.7 2 23 354 375 353 375 0.97 7 13 2.6e-05 0.0022 19.3 0.8 1 23 381 403 381 403 0.98 8 13 1.6e-05 0.0013 20.0 1.4 1 23 409 431 409 431 0.98 9 13 6.3e-05 0.0053 18.1 1.2 1 23 437 459 437 459 0.98 10 13 0.0055 0.47 12.0 1.9 1 23 465 487 465 487 0.96 11 13 6.6e-05 0.0056 18.0 0.9 1 23 493 515 493 515 0.97 12 13 1e-05 0.00088 20.5 1.9 1 23 521 543 521 543 0.98 13 13 0.00022 0.019 16.4 3.0 1 23 600 622 600 622 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCTGCTACCAATAAATTGCAAAACTTGAAGTATGATAAAATATGTCGCGCTTGTTTGGAAATTAAAAAGGACATGCGGCCCTTATTTGAACAATTGACTGCTACAATGTTAATGGGCATTTCCAAAGTGCAGGTGTCCATGGGCGATGGACTGCCTGCCCAGCTGTGTCTGCAATGCGTGCATCAGATCTCTCGCTGCAACGCCTTCAAAGACATGGTGGAGAGGAACGACGCCATCCTGCGGGAACAGGCCAAGATCAGGACTGAGATGGCGCTCAAGGCAGAGAGGGAAGAGaaagagaaaatgATGAACCTAAACTGCCCAGAGCCCGCGTACATCCACTACATGGAGGTCCCGATGGCCACCAACGCTGGTCAGATGCTGGAAAACTTCTTCGACACGTCGCCCGAACAGAATAACAGCATTAACAGCCCCAAGCCATCAGATGTCTCCACTAAAGACAGCTTTGAAGGAGACAAGAGCGATCCCCAGCCACAAACCGACCAAGTCTCCAGCACCAAAGACGACGAAGCTCTGAACTCTGACGAAGAGAACTACCTCCAACTAGTGGTGTTCCAAGCGACGTCGTCGGTGTCCCCCGGTCGCCACGTTTGCAACCTCTGCCACAAGGAGTTTAAGAACGCAAGGTTCCTCAAGCAGCACATGAGGTCGCATTCAAACTGGATCAAAGCCAACTGCAAGAAGCCACCGATGTGCCCGATTTGCGAAAGGACTTTCAAGGGTCCTGGCATGCTAAAAATGCACATGCGCACGCACGAGGAGCGGCCGCCCAAGCAGCCCACATGCTCCGTATGCCAGCGCACCTTCCCCACCAAAACGCTGCTCTACCGCCACAGACAAACGCACTTCGAACAGAAGACCCACCAATGCACCGTGTGCGAAAAGAGGTTCTTCAGTGGTTATGCCTTGAGGTCGCACATGGCGAGGCACAGGGGCGAGAGGCCGTATGTCTGTTCCATGTGCAACAAGAGCTTCTACAACCCTACGGATTTGAAGGTCCACTTCCGTCTGCACACGGGCGAGAAGCCGCTCAAGTGCTCGGAGTGCCACAAGACGTTCCGGCGGCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGCACCGTCTGCAACAAGGGCTTCTACGAGGTGTCTAAGCTCAACGCTCACATGAGAGTGCACACAGGCGAGCGTCCGTTCGAGTGCCAGTTCTGCGAGCGCAAGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCAACGCACGGTTCACCACCTCCTCCGCCAGGAACAACCACATGATCACGCACACTGGGAACAAGAGGTTCTCGTGCCCCGTGTGCCTGAAAGGCTGCACGTCGCGCACGGAGCTGCGCGTGCACTCCAGCAAGCACACGGGCGAGAAGCTGTTCGCGTGCGAGGTGTGCGAGCAGCGGTTCAGCTCCGCCTCCTACCTCGCCGTGCACCGGCGGCACCACACCGGCGAGCACAAGTACCACTGCGACGTCTGCGGGAAAGGTTACATAGAATCAAGTTCATACAACAAACACATGAAAACACACGAGGTGAAAGCAGAAGACTCATCCAACTCGGAGAATAGTTCCGAAAACAAACCAGCAGCACCAGCCATCAAACTGCAGATTCAGGCGGATATACAGGAACCGGAAGAGAAGGAGAGAGAAGAGGCGCCGGCGCCGACCCAGAGTGCGCCGGAAGCTGTGCAGAAGAGATACAAGTGCGGGGTGTGTGTGAAGACGTATATGTATCTGCATAGCTTGAAGAAACACATGCTCACACATATACAGcaacaacaacaacaacaacagcaGCAACAACAacagcagcagcagcaacagCAACATCAACAACAGCAACAACAACAGGTGCAGCAAGTGCAAGTCCAGCAGCAGCACCAGCAGCAGATGCAGCAAGTGCAGGTGCAGCAACAGCAACAGTTGCAGCAACAGGCCGTGCTGCAAGTGGGCAGCGTGCAGCAACTGGCTGTGCCCATACACGCGCAGCAGTTGCAGCAAGGGATCACAGTTTCTGGAGTGggCCCTCCGCACTCGTACCCTGTGATATCGTCGGTCCAGTCACTACAGTTACAACAAACACAACAACAAGTCAACACGCAACAGCAGCCGCAGCAACTTCAAGTTCAAACCATACAAATTCATCCGCAACATCAGCCTATACAAATTCAtGCGGTGGGCGTGCAGCAGGTGCAGCAGCAGCAGCTGCACGTGGCCACGTCGTCGTGCCAGACCATGCTGCCCAACATCTTACAGCTGCAGCCAGGCACGGTGGCGGTGTCGGGGCTGGGCGGCGCGGAGCTGGGCGGCGGCGTGGCGCACCGCATCATCCTGCAGCCGCAGCAGCCCAGCCACCCCGCCGTCTACACCATACACCACTGA
- Protein Sequence
- MAAATNKLQNLKYDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVSMGDGLPAQLCLQCVHQISRCNAFKDMVERNDAILREQAKIRTEMALKAEREEKEKMMNLNCPEPAYIHYMEVPMATNAGQMLENFFDTSPEQNNSINSPKPSDVSTKDSFEGDKSDPQPQTDQVSSTKDDEALNSDEENYLQLVVFQATSSVSPGRHVCNLCHKEFKNARFLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEERPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSMCNKSFYNPTDLKVHFRLHTGEKPLKCSECHKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYSCKLCNARFTTSSARNNHMITHTGNKRFSCPVCLKGCTSRTELRVHSSKHTGEKLFACEVCEQRFSSASYLAVHRRHHTGEHKYHCDVCGKGYIESSSYNKHMKTHEVKAEDSSNSENSSENKPAAPAIKLQIQADIQEPEEKEREEAPAPTQSAPEAVQKRYKCGVCVKTYMYLHSLKKHMLTHIQQQQQQQQQQQQQQQQQQQHQQQQQQQVQQVQVQQQHQQQMQQVQVQQQQQLQQQAVLQVGSVQQLAVPIHAQQLQQGITVSGVGPPHSYPVISSVQSLQLQQTQQQVNTQQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGTVAVSGLGGAELGGGVAHRIILQPQQPSHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220829;
- 90% Identity
- iTF_01302602;
- 80% Identity
- -