Pint003417.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- PAXBP1
- Assembly
- GCA_027563975.2
- Location
- CM050467.1:2136189-2147812[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.37 4e+03 -2.6 0.1 48 75 308 335 295 371 0.67 2 3 0.021 2.3e+02 1.5 0.0 170 206 490 526 485 527 0.82 3 3 1.7e-13 1.8e-09 37.9 0.4 7 190 520 682 514 693 0.69
Sequence Information
- Coding Sequence
- ATGTCCTTGTTCCGCAAACCGAAAAAGATCCACCAGAGGCGTATGTTTACCGCcgatgatgatgaagatgGTGATCCTGAGCCACCACCGCCGCCAGTCATCAGTCataaaaaggaaaacaaaCCGATTAAGCCCACAAACACTCCCTTGTTGAGTTTTGCTGACGAGGAAGAGGAAGGCGAGGAGTTCAAAGTGAAGAAGTCGTCACAGAGCAAGCGACTGGCCAAGCGGCGGGAGAAAGAGAGGGAGAAACGCCGGCCCCCGGACGgtgatagtaataaatatgacaataaTGGTGATGAGGACAAACCCAACGATATCGACCAATCAGACAAGCCGAAGCCGAAAAAGAAAGTGACTTTAGAGGGGTTGATTCTCTCCGGTCGGGAGGCGTTAGCTGCCGACGGGGCCGGGGATTTGTCCGAAGATAGCGCGAATGAGGAAGAAGAGGATAGTAGGGGATTTCACCAGTACCGCGCGGATTCCGTGCGGGCGGCCTTGGCTGTGGCGCCCGGACTCATACCGGACGCCGCGCTCATCCACGCGGCGCGCAAGACGCGACAGCAGGCTCGCGAGCTTGGAGACTTTGTGCCGATACAGAATGAGCCGTCGACCGGAGGCTCCAGGTTGATCCGGGAGGATGGCTCCGGGGATGAAGAGGAGGAAGGTAGGCTCATCGTCAGGGGGTTGGAGCTGCCCAGCGACAAGCCTAAACGTGGCACGGCTGCTGCAGCTTCAGAAGAGGAGCTGGACAGTGAGGCTGAGGAGTGGGTGGAGCAGCAGATGCAGAAGGCAATGCCTGCTATTGCTGATATCACAGGCGAGTTAGCCGCGGATCTGAACCCGttcgccgcgccgccgccgccggcgcgcgcgcagccgTTAGCGCAGCACCTGCGGCCTCTACAGGCTGACATGCGCAACCCCACCACTGTCTCGGAACTAATTAGGGCTCTCAGAGAAAGACTGGAAGAGCAGCAGACACAACGCGACAAGACGTGGCAGCGGCGGTCGCAGACGCGCGACGCGCTGCAGCGCGCGGCGCGCGAGCGCTCAGCGCGCGCCGCGCGCACGCGCGCGCTCGACGCCGCCTACCGCCGCGCGCAGGCCGCGCGCGGGTATCTCACCGACCTCGTCGAGTGTCTGGACGAGAAGATGCCGCAGCTGGAGGCGCTGGAGGCGCGCGCGCTGGCGATGCACAGGCGCCGCTGTGAGTTCATCATGGAGCGGCGGCGCGCGGACGTCAGGGATCAGGCGCAGGATGTACTCACTCTGGCTGCTCGGCCCGGCGCCGCGAAGCCGATAGACTCCGAAGAGAAGATCCGGCGCTGTGCGGAGCGCGaggggcggcggcgcgcgcgcagacTGCGGCGCgacgcggcggcggcggcggccggCGCTGCGGCGCGACACCGAGACGGGGACTCCAGCGACGACGAGCTGCCGCCCGCCGAGCTGCAGCACTACACGCAGGAGAGAGAGACGATCCGTCAACTGTCTAGGGCGGTGTTCGCGGACGCGCTGGCGGCGtggcgcggcgcgcgcggcgtGTGCGCGCGCGTGTCGCGCTGGCGCCGTCGCGAGCCCGCGCTGTACGCCGACGTCAGTGTGGCCTCCTGTCTGCCCGCGCTGCTGGCGCCCTACGTCAGGCATCAGttaATATTGTGGAATCCGCTAGCTGACGAAGACAATGAGGACTACGAGAGAATGGACTGGTACAAATGTGTGATGATGTACGGCGTTCGACACGAGCGGCTGTCGGATTCAGACGAGTCGGACTCCGAGACGGAGGGCGAAGCGCCCGCCGTCAGCGAGGACTCCGTTAGAGAAGACCCCGACCTGATGCTGGCACCCACATTGGTGGCCAAAGTGGTGCTGCCCAAACTCACGGAGCTGGTGGAGCAGGCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGACTGCGGCAGCTCATAGTGCGCTGCGCGGCCTTGCCCGCGACCTCGCCCGCGGTCGCGCGCCTCGCCGTCGCCGCGCACGCGCGTCTCGCGGCCGCGCTCGCCGCCGACGTCTTCCTGCCCGCCGTGCCGCCGCATATAATGGAGGGCGCGGGCGGACCGTTCTGGCGCCGCAGCCTCGGCGCGGGCGCGCGGCTGCTGCGCGCGGCGCTGGCGCTGTGTGCGCCGCCGTCGCTGCTGCGCGCCGACGGCATTGTACTCGCgcttatagaGACGTTAAGTTgcgcggcgggcgcggcgccCGGGCCGCAGGCGGCGGAGGCGGCGGCCGCGCTCGCGGCCTCACTGCCGCGCTCCGGCGCGCTGCGCGCCGTTGCGCTCCGCAGGCTCGCGGCGCTGGCCACGCTCGCGCTCTCCAGGCTGCAGACCGATAATCCTATGCACTTGAAAGCGCTGGAACAGGCGAGAGCGGTGATAGCAGAAGCCAAAGCGATGGAATGA
- Protein Sequence
- MSLFRKPKKIHQRRMFTADDDEDGDPEPPPPPVISHKKENKPIKPTNTPLLSFADEEEEGEEFKVKKSSQSKRLAKRREKEREKRRPPDGDSNKYDNNGDEDKPNDIDQSDKPKPKKKVTLEGLILSGREALAADGAGDLSEDSANEEEEDSRGFHQYRADSVRAALAVAPGLIPDAALIHAARKTRQQARELGDFVPIQNEPSTGGSRLIREDGSGDEEEEGRLIVRGLELPSDKPKRGTAAAASEEELDSEAEEWVEQQMQKAMPAIADITGELAADLNPFAAPPPPARAQPLAQHLRPLQADMRNPTTVSELIRALRERLEEQQTQRDKTWQRRSQTRDALQRAARERSARAARTRALDAAYRRAQAARGYLTDLVECLDEKMPQLEALEARALAMHRRRCEFIMERRRADVRDQAQDVLTLAARPGAAKPIDSEEKIRRCAEREGRRRARRLRRDAAAAAAGAAARHRDGDSSDDELPPAELQHYTQERETIRQLSRAVFADALAAWRGARGVCARVSRWRRREPALYADVSVASCLPALLAPYVRHQLILWNPLADEDNEDYERMDWYKCVMMYGVRHERLSDSDESDSETEGEAPAVSEDSVREDPDLMLAPTLVAKVVLPKLTELVEQAWDPMCVRACVRLRQLIVRCAALPATSPAVARLAVAAHARLAAALAADVFLPAVPPHIMEGAGGPFWRRSLGAGARLLRAALALCAPPSLLRADGIVLALIETLSCAAGAAPGPQAAEAAAALAASLPRSGALRAVALRRLAALATLALSRLQTDNPMHLKALEQARAVIAEAKAME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072833;
- 90% Identity
- -
- 80% Identity
- -