Prub020472.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
nfxl1
Assembly
GCA_963576535.1
Location
OY754929.1:8195177-8197645[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.014 1.8e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 19 3.1e-07 0.0039 17.7 15.9 3 19 186 202 185 202 0.95
4 19 2e-08 0.00025 21.5 13.3 3 19 239 255 236 255 0.91
5 19 0.55 6.9e+03 -2.3 0.8 6 10 280 284 279 284 0.92
6 19 2.4e-09 3e-05 24.4 12.4 1 19 290 308 290 308 0.98
7 19 0.00012 1.5 9.4 21.0 3 19 345 361 337 361 0.88
8 19 5.9e-06 0.075 13.6 18.3 1 18 395 412 395 413 0.97
9 19 2.3e-08 0.0003 21.2 16.9 1 19 422 440 422 440 0.99
10 19 0.76 9.7e+03 -2.8 1.3 5 10 468 473 468 474 0.69
11 19 0.00014 1.8 9.2 6.0 9 19 488 498 486 498 0.89
12 19 0.0013 17 6.1 6.3 1 11 508 517 508 518 0.96
13 19 2 2.5e+04 -7.2 8.1 14 18 547 551 547 552 0.90
14 19 0.17 2.1e+03 -0.7 0.4 8 12 568 572 567 579 0.79
15 19 1.1e-05 0.14 12.7 6.3 1 11 588 598 588 599 0.98
16 19 0.39 4.9e+03 -1.8 1.5 14 19 612 617 612 617 0.86
17 19 0.00022 2.7 8.6 14.3 1 18 628 645 628 646 0.84
18 19 2 2.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 1e-06 0.013 16.0 13.4 1 18 687 705 687 706 0.87

Sequence Information

Coding Sequence
ATGGCGCGTCGCTACAGAGACGCTGCGGCAAAACTGCAGCAAAACGTACAAAAACATCTCAAGGATATGAAAGATCTATCATCCTCCGAAGATGAAGAGCCTTACGAGTCCAGTGTCATCGAGGGGATGTTCCAGAGCTACTGGCGGGGCGGTGGGGACACCCAGATGCTGAACAGAACCAAGAATCTTCTAGAAGAGGCGATCAGCGGTCGCTCGGTAGCTTGCTTGATCTGCATCAGTTCTATCAAACGAATCCATGCCGTCTGGACGTGTGACCACTGCTACTCATACTTCCATCTCTCCTGTATCCAGAAATGGGGAAGCGACAGCATAAGTTTGCGCAGTATTGAACCTCAAATCCCAATAAGCGTGTTTAGGCCACAGAAAATAGAATGGTGCTGTCCGAAATGCCGTAATTCATATAGCAAAGAAGAAATACCTAGGAAGTACAGATGTTTTTGCGGTAAAACTGATAATCCAGTTGTTCACCCATGGCTGATACCTCATACTTGTGGGGAAGTATGTGAAAAGAGACTTTCGACAGGCGAGAACTGTAAGCATAAGTGTCTGCTCCTGTGCCATCCAGGACCATGCCCTCCTTGTCCACAAACAGTGAATGGGATATGCTACTGTGACAAAGAACATAAGAAAGTCAGATGCAGTGCAGCCAAGTGGTCATGTGGCCAGCAGTGTCTAAAATCATTACCTTGCCAGACACATACATGTGAGCTGTTATGCCACGAGGGAGATTGTCCACCCTGCACATACACCAGTGTTCAGCCTTGTCAGTGCGGAGCAGAAAAAACAAAACGACCCTGTAATGATCCATTCTGGCACTGTGAGAAACTATGCATGAAGCCTTACTCATGTGGCTACCACAAATGTCAGAAAGTATGCCATTCAGGCAGCTGCGAAGACTGCCCGAACTCTGGCATGAGGTCCTGCCCATGCGGAGCAAACGAGAGGTATGTCCAATGTCCCGACACCATGGAAACATGTCTCGGAACCTGTGGCAAGAAACACCATGACTGTGCACATAGTTGCCCAGAAAAATGCCACAAAGGTACTTGCCCACCCTGTCAAGTATTGATCCAAAAGAAATGCCAATGTTTAACCCACACCAGATCCCTTCCTTGCAGTAAGGAGTTCAAATGTGACACAAAATGCAGAGGAACCCGTCCATGTGGCAAGCATGGTTGTGCAAGAAAATGCTGCAACGGAAACTGCCCGCCTTGTGAGAAGGCTTGTGACAAGCCTCTTCAATGTGGCCGTCATAAGTGCACTACTATCTGCCACCATGGACCTTGCTATCCATGCCCTTTGGAAACTAAGGTCACTTGCAAGTGTAAGGAGACCTATGTATCTGTCCCATGTGGGAGAGAGAGATTCACCAAACCACCTAAATGTCAATTGCCCTGCAAGGTGAGGTACAAATGTGGTCATGCAGAGGAAAACAAGCATGCCTGCCATTTCGGAGACTGTCCTCCATGCAAAGCCATCTGCTACAAAACTTATCCGATATGTGGTCATGAATGCCAGATGATTTGCCATCAGTTCAAAGCAGTTGTCTTCAAACAGGTTGAGAAACCTGCCACACCGTGGGAAGTTCAACCACCAAAGACCAAGATCATGACTTTGGAATGTCCTCCATGTTGTACACCTGTGACTGTCATCTGTTTCGGAGAACATGAGACAGACAGCCAACCATGCCACAAAGCAGCTCGCAGACCTTGTGGCAGGGAATGTGGAAAACCTCTGGCTTGTGGAAACCACAGCTGCACTCAGATCTGTCACTTGTATTGCCCAGATCCTGACTACCCGAATGTGCCATATAATTGCAGGCCTTGTAGCAGAGAGTGTCTGAAGCCACGCCCAGAGAAGTGTTCCCATAAGTGCTCCAAAAGCTCCTGCCACCCTGGTATCTGTCCCCCCTGTGAAACATTGGAACGCATTCCATGCCACTGTGGCATCACTGAGCTATATCTTCGATGCAGAGAATACTCTAAAGCTACAGAAGAAATGCTATCATGCAATCAGCAATGCCCAAAGAATCTGGAATGTGGACATCGCTGCAAAAATACCTGCCATCCAGGTCCTTGCAGCAACCAGGTATGCACCAAGAAGACTAAGATCCATTGCCCCTGTGGGAACATAAAGAAAGATGCTCCATGCAATGTGGTCAAAAGCGGTGAAGCTATTGCTTGTGATAAGACTTGTGAAGTCAAAAAAGCAGCTGCTAAACTGGAGAGTGAGAAAGAGCATCAGAGGTTGAAGCAATTAGAAGAGGAAAGGAACAAGAGAGAGTTGGCTGAATATGAGTGGAAACTCAGtgggaagaagaagaaacatAAGGAAAAGAAGGTAGTTATCAATAAGGATGATAGGAACTGGTTGCATCGCCACTGGTTGCCAGTTCTATCGGTACTTGTAGCAATAATGGCAGTAggctatattatttattatatgtag
Protein Sequence
MARRYRDAAAKLQQNVQKHLKDMKDLSSSEDEEPYESSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSVACLICISSIKRIHAVWTCDHCYSYFHLSCIQKWGSDSISLRSIEPQIPISVFRPQKIEWCCPKCRNSYSKEEIPRKYRCFCGKTDNPVVHPWLIPHTCGEVCEKRLSTGENCKHKCLLLCHPGPCPPCPQTVNGICYCDKEHKKVRCSAAKWSCGQQCLKSLPCQTHTCELLCHEGDCPPCTYTSVQPCQCGAEKTKRPCNDPFWHCEKLCMKPYSCGYHKCQKVCHSGSCEDCPNSGMRSCPCGANERYVQCPDTMETCLGTCGKKHHDCAHSCPEKCHKGTCPPCQVLIQKKCQCLTHTRSLPCSKEFKCDTKCRGTRPCGKHGCARKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPLETKVTCKCKETYVSVPCGRERFTKPPKCQLPCKVRYKCGHAEENKHACHFGDCPPCKAICYKTYPICGHECQMICHQFKAVVFKQVEKPATPWEVQPPKTKIMTLECPPCCTPVTVICFGEHETDSQPCHKAARRPCGRECGKPLACGNHSCTQICHLYCPDPDYPNVPYNCRPCSRECLKPRPEKCSHKCSKSSCHPGICPPCETLERIPCHCGITELYLRCREYSKATEEMLSCNQQCPKNLECGHRCKNTCHPGPCSNQVCTKKTKIHCPCGNIKKDAPCNVVKSGEAIACDKTCEVKKAAAKLESEKEHQRLKQLEEERNKRELAEYEWKLSGKKKKHKEKKVVINKDDRNWLHRHWLPVLSVLVAIMAVGYIIYYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_01429618;
80% Identity
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