Prub015287.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754922.1:7787104-7790224[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.021 1.8e+02 2.9 0.0 22 46 176 200 171 205 0.88 2 9 0.072 6.1e+02 1.1 0.0 20 43 230 253 221 258 0.82 3 9 0.002 17 6.1 0.0 22 48 260 286 251 290 0.87 4 9 0.051 4.3e+02 1.6 0.2 27 44 298 315 295 321 0.85 5 9 4.6e-05 0.39 11.4 0.0 20 44 375 399 368 403 0.89 6 9 0.017 1.4e+02 3.1 0.2 22 44 405 427 401 431 0.87 7 9 0.00064 5.4 7.7 0.3 21 46 432 457 428 465 0.89 8 9 0.27 2.3e+03 -0.7 0.1 22 49 461 488 458 493 0.79 9 9 0.076 6.5e+02 1.1 0.1 21 48 488 515 479 517 0.76
Sequence Information
- Coding Sequence
- ATGAGCATAGCCCTATGCCGAGCGTGTCTCACTGAAAATGCAAGAATGCAGTCCATCCGCAACACCCAATTGCATGAAGTCTATGAAAAACTATCCAATACTAAGCTTATAACCGAAGATGGAAGGACTGAGACAGTATGCTTCACTTGCTACTTGCAGCTGCAAAGATGCCACAACTTTTCTGTTATGAGTCAAAAAGCAAACAACATACTTACACAACTTTACTGTGATGGCACACAGATATCACAAGAAGATGTTGCTACACTGCAAGACCCCTTTGACTTATTGGGTTCCTTGAAAAATTCTCAACCACAAGAAAGTCAACCTGATAAGGAGGTCAAAAAAGAATGTGATTCTGTTAAAACAGAATTTGTTCAAATTGAGAGGAGCTTCAGTGATAACATCAAAATAgaagATACAATACATGGCAATGACAGCCCTTCTTCAGATGCATCAATTACAAAACCTGTGAAGAAAATAAGATCCTGTCGTAAGTATACACATGATGAAATTTCGTATAACAAAGAAAAGTCGTATACCTGCGAAGTGTGTCGCAAAACGTtcgctttaaaaaaaaacttaaaatcacACATAACAATCCACATCGGAGAAAAATCTTGGGCATGTGATCAATGCTGTAAAAAGTTTTCCAACAAATATGAATTACAAAGGCATATGAGATcgcacactggagaaaagccatatgctTGCAACCAATGCCATAAGACGTATTCTGATGTCGGAAACTTAAACAAACATAAGATGATACATACTGGTGAAAAGTCACATGTTTGCCCTGAATGCTTAACGTCATTTACTCTTAAGGGTAATCTACAGCGGCATCTTAAGAAATATCACACAGGGGATATACCAGTTATCAaattttttgtgtgcaatatatGTGACAAAAAATTTCGTCGTGAGCTTCAGTTGAGAAAGCACATAAGATCTCACACGGACCAAAAGTCCTGCGCCTGTGAGAAGTGCGATAAAACAttcgcaaacgaaacatatctaAAAGCTCACGAGAAAACCCATAACAAAGAAAATACAAGCGCGTGTGACAGGTGCGGCAAAACATTTCTTGACAAATATCGACTGAAGAGACATATGAAATCTCACAATGGAGAAAAGCCTTATGCTTGCGACCTATGTAACAGAACTTATAAAGATAGCGGGAATTTGAGGAAGCACTTAATGGATCATACAGGGGAAAAATCACATATTTGCACAATATGCAACGCGTCGTTCACTCGAAAAGGAAGTTTGCAGCGCCATGTTAGATGTCATACGGGGGAAAAGCCATATTCTTGTGATGTTTGTCAAAAATCAATGTCAACATCGACTCATTTGAAAAGGCACATGAGAATTCACACAGGCGAGCGGCCATACCCATGTGGTGTCTGCGGGAAGTCATACGCCGATAAAGACGATTGTAAAAGGCATATGCGAATACACTCTGGGGAAAAGCCATATTATTGCAACATTTGTgattataaaagtttttttaaaaaagctTTGAAGTCGCATTTATCCAGTAAACACCCACCAACTCAATGA
- Protein Sequence
- MSIALCRACLTENARMQSIRNTQLHEVYEKLSNTKLITEDGRTETVCFTCYLQLQRCHNFSVMSQKANNILTQLYCDGTQISQEDVATLQDPFDLLGSLKNSQPQESQPDKEVKKECDSVKTEFVQIERSFSDNIKIEDTIHGNDSPSSDASITKPVKKIRSCRKYTHDEISYNKEKSYTCEVCRKTFALKKNLKSHITIHIGEKSWACDQCCKKFSNKYELQRHMRSHTGEKPYACNQCHKTYSDVGNLNKHKMIHTGEKSHVCPECLTSFTLKGNLQRHLKKYHTGDIPVIKFFVCNICDKKFRRELQLRKHIRSHTDQKSCACEKCDKTFANETYLKAHEKTHNKENTSACDRCGKTFLDKYRLKRHMKSHNGEKPYACDLCNRTYKDSGNLRKHLMDHTGEKSHICTICNASFTRKGSLQRHVRCHTGEKPYSCDVCQKSMSTSTHLKRHMRIHTGERPYPCGVCGKSYADKDDCKRHMRIHSGEKPYYCNICDYKSFFKKALKSHLSSKHPPTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219971;
- 90% Identity
- iTF_01219971;
- 80% Identity
- iTF_01219971;