Prub020766.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754930.1:4169671-4181771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2e-05 0.0014 19.4 2.1 1 23 266 288 266 288 0.98 2 12 0.023 1.5 9.9 2.1 1 23 296 319 296 319 0.94 3 12 0.28 18 6.5 2.3 1 23 414 436 414 436 0.98 4 12 0.0014 0.092 13.7 2.4 2 23 445 467 444 467 0.96 5 12 0.085 5.5 8.1 0.5 1 23 471 493 471 493 0.97 6 12 0.00053 0.034 15.1 2.2 1 23 498 521 498 521 0.97 7 12 0.017 1.1 10.3 1.4 1 23 525 548 525 548 0.92 8 12 0.34 22 6.2 0.0 3 20 569 586 568 588 0.91 9 12 1.2 77 4.5 0.1 3 23 650 671 649 671 0.88 10 12 1.9e-05 0.0013 19.6 0.6 1 23 680 702 680 702 0.98 11 12 0.0002 0.013 16.4 1.2 1 23 708 730 708 730 0.97 12 12 2.3e-05 0.0015 19.4 4.6 1 23 736 759 736 759 0.98
Sequence Information
- Coding Sequence
- ATGAGGGACCTGAAAGCCTGCACTGTGTGCCTTAGTATTGGCATAAAACTATATAGTTTGAAATCTGGCAATCTGAGGCAAGAATTCAATACTATATCCGGACTGAAGaaAATGAAAAGAGATGGAATGCCAGATCACCTATGCTTCCAATGTTGCGCCTTTGTGAAGAAATTCTATAAATTCCAGCAGAAATGTCAACGAGCACATTATACTTTGGAGCAAATGCTGGTCAAACACAAAGaaATTAAAAAGTTACATCTTAAATATCTAAACAGAGAGGAGCTTGGAATCATGTCATCACTTTCACTTTTAAATCTGAATAGGGCTCACTATGAGAGCCATACATACCAGTGGGTAACATCTAGCAATATCAGCAGAGCTAAAGAACCAGAATTTGACTTCTTACCTATCATTCACTGCAGTACCTTAACAAAAGAAGACACCTTTGAAGATGTTATGACTAAAACTACAGACATTGATATCGATGAAGACAATATTAAAGTTGAAAGTGATGGGAAACATGTAAAAAAACAAGATAGAGTTAAAAATGTGCATAAAATAATCGACCATttggatgaaaaaaataattatagtggTTCCAATGATTATATGGAATCAAAAGATGTAAATGATGATATCGACTATGATGACAATGATTTATTTACTGTGTCTTGTAAATTGGGAGACAAGGCAGATGGGTCTAAATTCAATGAAGAATATGCCCAAATGGTTCCTATATCTGTCAAAGAAGCAAGAGCAGCTATTGAAGTCAAGAAACTATACATGTCGGGGTTGCATAAATGTGACAGTTGTGGCCGGGCTTTTAAGACTTTGGAGAATTTGAAAGTACATTCAAAGATGCATGATAAAcatttaAAAGGAAACTATCACTGTGAGATCTGTGATTACTACTATAAGACCCAGTTCCTCCTAGATGGGCATATGACGGAGAAGCATATGTACAAGTACCTTTGCAGACTGTGTCCTGAAGTTAGTTTTGACAGATTGACAGCTAAATCTCACTACTGCTTACACCACTTAAAGTCAGGCACAAGGTGGAAAGACAGCGAGCGGCCAACTTGGCTCGGCCGAGGTAAAAAGAAGACGACGAGCAAGACGAAACGTAAAGGTCCTATTTCTATACCCAAAGATGTGTTCTCCTTTGAGCCGATTGGTCCAGAAGAGCAGTACTCTATTATACAGGACCGGAAGACAAGTCGTAACTATTTAGAAGCGAAGTACAGATGTGAGTTCTGTTTTAGAGGATACAGATTGATGACCACTTATAGTAACCACATGGCGAAGCATAATTCGTCGATATCAGGCAACCTCCAATGTGATATGTGTAAGCTGTTCTTCAGAGACCAGAGGAAAATGTACAAGCACATGAATATGTACCATCTCAACAAATACAGCTGTAGGAGCTGTGACTTCGTTTCTACTaacagAAGTCAAGCAGTAGCCCATTACAAATGGCATGCCAACGTTACCTACGAGTGTGCTCACTGCGATAAGAAGTTTGTAAAGGCCTCAACCAGGTTGACACACATCAGACTGAAGCACCCGTCTACCTACATTTGCAATCTGTGCGGGCACAGCTTTGTTAGCTCTGCGGGCCTTGTCTGTCATAGACAGATCACGCATTCTAAAGGGGAAATATCAGAAATAGAAAACGGAGTGATGGACATCGGCAATCCCAACTACTGCGTGGATTGCGGCATTGTGTTCGCAAGCGATCAGGCGTTCGCGACGCATCTCGGCAGCTCCAGCAAACATGTCAAGACAAATATATCTGTCCAGATGACACAGCGCGATTCCCGCAAGCGAATGCGAAGGGAGATGGGAGCGCCCACGCGCCCGCAGTCGCGGGAAGTGGGTCTCGTGGAGAAGAAGAGCAGGAACGGAACATCGGAGGTGCTCAACACTGGGGTCACTACCTCTAACAACTGTGAAGTGTGCGGCAAGTACCTAGTGAACGACGTCCAAGCGCGGCGGCACTACGAGGCGGAGCACCCCGGGGCTGACTATCTGCGGCGGTACATGTGCGAAGTGTGCGGACACACGGCcaggCAATACGCGAATCTGCTGGTGCACATGAGAACGCATACGAACGAGAAGCCTTACGAATGTCCGCATTGTGATAGAAGATTTAGCATGCTCAGCAATCGAGACAGGCATCTCGTGGTCCACACCGGCGAGAAGAGATACCAATGCCAGCATTGCCACCGGCGGTTCACGCAAAGCAGCGCCGTCAAACTGCACATACAGACAGTGCATCTGAAGATACCGTACGCGCCTTGGGACAAGAAGAACAGAAAGAGACGGAAGGAGCTGGAGGCGGCTGGTGTTTCATCAGATTTGAACTTAGTAGAAGCGCCACCGATGCCAGTCATACAACAACCACACCCTAAGCTGCTTATCGACACACAAGGAGAATACATTAACGCGTATATTACTTATAGTGacgaataa
- Protein Sequence
- MRDLKACTVCLSIGIKLYSLKSGNLRQEFNTISGLKKMKRDGMPDHLCFQCCAFVKKFYKFQQKCQRAHYTLEQMLVKHKEIKKLHLKYLNREELGIMSSLSLLNLNRAHYESHTYQWVTSSNISRAKEPEFDFLPIIHCSTLTKEDTFEDVMTKTTDIDIDEDNIKVESDGKHVKKQDRVKNVHKIIDHLDEKNNYSGSNDYMESKDVNDDIDYDDNDLFTVSCKLGDKADGSKFNEEYAQMVPISVKEARAAIEVKKLYMSGLHKCDSCGRAFKTLENLKVHSKMHDKHLKGNYHCEICDYYYKTQFLLDGHMTEKHMYKYLCRLCPEVSFDRLTAKSHYCLHHLKSGTRWKDSERPTWLGRGKKKTTSKTKRKGPISIPKDVFSFEPIGPEEQYSIIQDRKTSRNYLEAKYRCEFCFRGYRLMTTYSNHMAKHNSSISGNLQCDMCKLFFRDQRKMYKHMNMYHLNKYSCRSCDFVSTNRSQAVAHYKWHANVTYECAHCDKKFVKASTRLTHIRLKHPSTYICNLCGHSFVSSAGLVCHRQITHSKGEISEIENGVMDIGNPNYCVDCGIVFASDQAFATHLGSSSKHVKTNISVQMTQRDSRKRMRREMGAPTRPQSREVGLVEKKSRNGTSEVLNTGVTTSNNCEVCGKYLVNDVQARRHYEAEHPGADYLRRYMCEVCGHTARQYANLLVHMRTHTNEKPYECPHCDRRFSMLSNRDRHLVVHTGEKRYQCQHCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGVSSDLNLVEAPPMPVIQQPHPKLLIDTQGEYINAYITYSDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638921;
- 90% Identity
- -
- 80% Identity
- -