Ecor012442.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352722.1:3956421-3966831[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3e-05 0.0015 19.0 3.9 1 23 275 297 275 297 0.98 2 12 0.0031 0.15 12.7 1.0 1 23 305 328 305 328 0.95 3 12 0.045 2.3 9.0 1.6 1 23 423 445 423 445 0.98 4 12 0.0028 0.14 12.8 2.1 2 23 454 476 453 476 0.96 5 12 0.086 4.3 8.1 0.5 1 23 480 502 480 502 0.97 6 12 0.0015 0.074 13.7 2.2 1 23 507 530 507 530 0.96 7 12 0.0095 0.47 11.1 1.4 1 23 534 557 534 557 0.93 8 12 1.1 53 4.7 0.0 3 20 578 595 577 597 0.92 9 12 1.2 60 4.5 0.1 3 23 660 681 659 681 0.88 10 12 2e-05 0.00099 19.6 0.6 1 23 690 712 690 712 0.98 11 12 0.0002 0.01 16.4 1.2 1 23 718 740 718 740 0.97 12 12 1.6e-05 0.00078 19.9 2.5 1 23 746 769 746 769 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACTTAACAGCCTGCACGGTGTGTCTTAGTACTGGCATAAAACTTTACAGTCTGAACACTGGTAATCTGAGACATGAACTAGACTCCATAGCCGGACTAAAGACAATTACAAGAACTGGAATGCCGGATCACTTATGTGTTGAATGCTGTGCCTTTGTGAAGAAATTCTATAAATTCCAGCAAAAATGTCAACGGGCACATTATACTTTGGAGCAAATGCTGCTCAGCAACAAAGAAATCAAAAAATCACACCTTAAATATTTAAACCGGGAGCAGCTTGGTATCATGCCATCTTTATCACTTTTAAATCTAAGCCGTGCTCACTATGAAACTCAGACATACCAGTGGGTTGCCCCTAGTACTGTGAGTCGGACAAAAACATCTGATTTTACCATCACACCTACCATTCACTACAGTACTTTAACGAAAGAAGACACATTTGAAGATGTTATATCTAAAACTGTAGAGATTGATATGAATAAAGGTATTAAAGTTGAAATTGATGTTGAACATGCAACTGAACTTGAAACAGAGAAAATAAAAAAAAAACAAACACAGAATGTTGATACACCAGATGTGCCTATCAACAATATTTTAGAAAATAATAAATTTGAAATTGGTTCTGCTGAGTATATGGAATCAAATGATGTAAATAGTGATTATGATGATCGTGATGATATTTTTAATGCGTCTTGTAAAGTGGGCGACAAAGCAGACGGGATGAAATTTAATGAGGAGTATGCCCAAATGGTTCCTATATCGGTTAAAGAAGCAAGGGCAGCTGTTGAAGTCAAGAAACTATACATGTCTGGGTTTCATAAATGTGGGACATGTGGCCGGAATTTTAAAACTAAGGATAAGTTAAGAGTGCATTCAAGGATGCATGATATACATCTAAAAGGTAACTATGTCTGTGAGATCTGTAAGTACTACTACAAAACACAGTTTCTCCTCGATGTGCATATGACGGAGAAGCACATGTACAAATATCTCTGCAGACTGTGTCCTGAAGTTAGTTTTGATAGATTGACAGCTAAATCTCACTATTCCATACACCATCTTAAGTCCAGCCCAACTTGGAAAGATAGTGAGCGGACAACATTTCTTCGCCGTGGTAGAAAAAAGAAAAAAAACAAGAGAAAACGTAAAGGTCCCATCACAATTCCCAAAGAGGTCTTCTCTTTTGATCCGATCGGCCCAGAAGAGCAGTATTCTATTATACAGGATCGGAAGACAACTCGTAACTATTTAGAGGCGAAATATAAATGCGAGTTCTGTTTTAGAGGGTACAGACTAATGGCTACCTATAATAACCATATGGCGAAGCATAATTCGTCTATATCCGGCAATCTCCAGTGTGATATGTGTAAGCTCTACTTCAGGGACCAGAGGAAAATGTATAAGCATATGAATATGTACCATCTTAACAAATATAGCTGTAGGAGCTGTGACTTCGTATCTACTAATAGAAGTCAAGCAGTAGCTCATTACAAATGGCATGCTAACGTTACCTACGATTGTGCGCACTGTGATAAAAAGTTTGTAAAGGCCTCAACCAGATTAACACATATTAGACTGAAACACCCATCTACCTACGTTTGCAACCTGTGTGGCCACAGCTTCGTTAGCTCTGCGGGTCTGGTATGTCACAGGCAGATCACACATTCTAAAGAGGAGATATCAGAAGTAGAGAGTGGTCTAATGGATGTTACAAATCCTAACTATTGTGTTGACTGTGGCATTCTGTTTGCGAACGAGCAGGCCTTCGCCACGCATCTCGGGAGCTCCAGCAAACACGTCAAAACTAATATATCTGTACAAAAGACTCAGCGGGACTCCCGTAAAAGAATGCGAAGAGAGATGGGTGCACCGACACGCCCTCTATCGCGAGAAGTGGGACTCGTTCAGGAGAAGAGAACTCGGAACGGCACTTCTGAGGTTCTGAACACTGGTGTTACAACATCTAATAACTGTGAAGTGTGTGGCAAGTACTTAGTGAATGACGTACAAGCGCGACGGCACTACGAGGCAGAACATCCCGGCGCAGATTAcctacgtcggtatatgtgcgaagtttgcggacacacagccaggCAATATGCGAATCTTCTAGTACACATGAGAACGCATACGAACGAGAAACCGTACGAGTGTCCGCACTGCGATAGAAGATTTAGCATGCTCAGCAACAGAGACAGACATCTCGTGGTGCATACCGGTGAGAAGAGGTATCAATGCCAACATTGCAGTAGACGCTTCACACAAAGCAGCGCTGTAAAACTACACATTCAGACAGTACATTTGAAGATACCGTACGCGCCTTGGGACAAGAAGAACAGGAAGAGACGGAAAGAGTTAGAAGCAGCTGGTGTTTCTTCAGATTTGAACTTAGTTGAAGCGCCACCTATGCCTTTAGTACCACCACCACAGCCTAAACTACTTCTAGACACACATGGAGAATATATCAACGCGTATATCACTTATAGTGACGAATAG
- Protein Sequence
- MWDLTACTVCLSTGIKLYSLNTGNLRHELDSIAGLKTITRTGMPDHLCVECCAFVKKFYKFQQKCQRAHYTLEQMLLSNKEIKKSHLKYLNREQLGIMPSLSLLNLSRAHYETQTYQWVAPSTVSRTKTSDFTITPTIHYSTLTKEDTFEDVISKTVEIDMNKGIKVEIDVEHATELETEKIKKKQTQNVDTPDVPINNILENNKFEIGSAEYMESNDVNSDYDDRDDIFNASCKVGDKADGMKFNEEYAQMVPISVKEARAAVEVKKLYMSGFHKCGTCGRNFKTKDKLRVHSRMHDIHLKGNYVCEICKYYYKTQFLLDVHMTEKHMYKYLCRLCPEVSFDRLTAKSHYSIHHLKSSPTWKDSERTTFLRRGRKKKKNKRKRKGPITIPKEVFSFDPIGPEEQYSIIQDRKTTRNYLEAKYKCEFCFRGYRLMATYNNHMAKHNSSISGNLQCDMCKLYFRDQRKMYKHMNMYHLNKYSCRSCDFVSTNRSQAVAHYKWHANVTYDCAHCDKKFVKASTRLTHIRLKHPSTYVCNLCGHSFVSSAGLVCHRQITHSKEEISEVESGLMDVTNPNYCVDCGILFANEQAFATHLGSSSKHVKTNISVQKTQRDSRKRMRREMGAPTRPLSREVGLVQEKRTRNGTSEVLNTGVTTSNNCEVCGKYLVNDVQARRHYEAEHPGADYLRRYMCEVCGHTARQYANLLVHMRTHTNEKPYECPHCDRRFSMLSNRDRHLVVHTGEKRYQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGVSSDLNLVEAPPMPLVPPPQPKLLLDTHGEYINAYITYSDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429317; iTF_01220072;
- 90% Identity
- -
- 80% Identity
- -