Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754914.1:1412139-1425344[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6 1.7e+02 3.4 0.4 2 23 6 27 5 27 0.96

2 15 0.56 36 5.6 0.0 1 23 1017 1040 1017 1040 0.91

3 15 9.1 5.9e+02 1.7 0.1 1 23 1132 1154 1132 1154 0.89

4 15 2.2e-06 0.00014 22.6 0.8 2 23 1157 1178 1156 1178 0.97

5 15 0.0012 0.078 13.9 2.9 1 23 1184 1206 1184 1206 0.99

6 15 0.0068 0.44 11.6 6.4 1 23 1212 1234 1212 1235 0.96

7 15 2.9 1.9e+02 3.3 1.4 5 23 1248 1266 1246 1266 0.96

8 15 0.024 1.6 9.8 1.6 3 23 1273 1294 1272 1294 0.97

9 15 0.065 4.2 8.5 3.4 2 23 1335 1357 1334 1357 0.95

10 15 0.016 1 10.4 0.1 2 23 1374 1394 1373 1394 0.97

11 15 0.00012 0.0076 17.1 0.8 1 20 1400 1419 1400 1422 0.92

12 15 0.0049 0.32 12.0 2.2 1 23 1430 1452 1430 1452 0.99

13 15 0.0068 0.44 11.6 7.2 1 23 1458 1480 1458 1480 0.98

14 15 0.00013 0.0081 17.0 0.8 1 23 1486 1510 1486 1510 0.97

15 15 0.00061 0.04 14.9 5.5 1 23 1516 1538 1516 1539 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6	1.7e+02	3.4	0.4	2	23	6	27	5	27	0.96
2	15	0.56	36	5.6	0.0	1	23	1017	1040	1017	1040	0.91
3	15	9.1	5.9e+02	1.7	0.1	1	23	1132	1154	1132	1154	0.89
4	15	2.2e-06	0.00014	22.6	0.8	2	23	1157	1178	1156	1178	0.97
5	15	0.0012	0.078	13.9	2.9	1	23	1184	1206	1184	1206	0.99
6	15	0.0068	0.44	11.6	6.4	1	23	1212	1234	1212	1235	0.96
7	15	2.9	1.9e+02	3.3	1.4	5	23	1248	1266	1246	1266	0.96
8	15	0.024	1.6	9.8	1.6	3	23	1273	1294	1272	1294	0.97
9	15	0.065	4.2	8.5	3.4	2	23	1335	1357	1334	1357	0.95
10	15	0.016	1	10.4	0.1	2	23	1374	1394	1373	1394	0.97
11	15	0.00012	0.0076	17.1	0.8	1	20	1400	1419	1400	1422	0.92
12	15	0.0049	0.32	12.0	2.2	1	23	1430	1452	1430	1452	0.99
13	15	0.0068	0.44	11.6	7.2	1	23	1458	1480	1458	1480	0.98
14	15	0.00013	0.0081	17.0	0.8	1	23	1486	1510	1486	1510	0.97
15	15	0.00061	0.04	14.9	5.5	1	23	1516	1538	1516	1539	0.96

Sequence Information

Coding Sequence: ATGGACCAGCTCGTGCAGTGCCCCGTCTGTACGCTCTTCCTGCACAATGGGATGACGCTGGAGTCCCACCTCGACACGCATCCCAAAGATCAAGTGATTAAAGCTCTCTGCAGCATCACCAAATCAAACAATAGCTGTATCAGTAGCAGAACGCCTACTCCAGCCAATTCCGAGAGGTCCTACAGGAGCAGGTCTAGAACACCCATTACCGAGGACAGTGGGACTAACCCTTGGAATGGAACAAAGGAACATGAACGGTACTGGGCCCAGACACCTAGTGCCTCCAGCAGGACCCCAAGTGGGACCTCCAGCCGAGGGGGGAGTCGGACCCCCAGCACCAGGACTCCCAGTAGAACTCCCAGTAGGACTCCCAGTAGAACTGCCAGATCTCTTTCATCAGTCAACATTTCAAGAAATTGCACTCCTGATATGAGATTAGTTGATAACTTGGCATTCGAAAACACAACAGTTAGTAGTTTATCACAAAACTCTCAATCTCGCCATTCTAACTCACCTTTACTGATGAAGACGGATAAACCTCCACGGACATACCCACCAGCTGTGATACCAGATTATGACCAGCACTTCATAGATTACTCTGACCAGCAGGAGGACCGGGAAGTCAAGTATTCTAGAAGTGCTGAGTATAATGCCCTGGATGTCAATAACATGTATTCCTACAATGTGCCAATGATTGAGTCTGCTGGTAAAACTCAGTCTATACCATCTCATACATTGCCTCGGAAGAAAACTGAACAGGTGAAGGCTAGCAGTGCTATGAAGTCCAACAATTTACTAAAccttgttaaaaataatattggtggaatgCAGTGCTTACCTCCTTATATGGGGAACCGTAGTGCACCTTACCACATGGTGGCAAATGCCCCTACATTTGTTCAAAAGAATGTCCAGAATAGTATGGTAATGACTAGTGGGTTACCCAATACCCAAGTTCAAATAGAGACCAAAAGGCCTCCACTTGTTCAAAACCATTTCAGTCTGGCCACTGGAAACTTCACACCGGGAACTACAGTAGTAACGCAGAACTCCCAGTACATTTACCAAGAAATGGTGCAGAACATTGACCCCAAATCCTTTATCCCCACAATGCCACCTGTTTTCACAGGCCATGAGAATATAACCAATGTTGCTCATGCTCAAACAAGTTCAGAGTGTACAAGAATGTATCAAAATGTGATGCTTGTTGATCAATTTGGGAACAGTTCATGTATGTACACACCTCAGCCAATGCTGTCCAAAGCAACATGTGCTCCTCCATTGTTCAGTGAGAATTTGTCACAGGCTGTTAATGCATTAGTGCAAAAACCGAGTCCAGTAAAGAGGAACCCTAACAAGACTCTAATCATAGAAGTGGGACCCATATTGCCTACACAGAAAGGGAGCTCTCGTTCCTGTGGTACAAATACTATGCTATCACAGATTAGAGTTCCCATCCCCAACACTCCTATAATATCTACACCAAAACCTGAGGCTCCCAGTATTTCGATAACCGAGAAAGTAGAAAAAATTGAAATGCCAGGCACAAGCAAAGGGTTGAAGATCCTGAGCAATATAAAAGTGGAAGTCCCTGTGCAACACGTGAAAAGTATGATAAACACCGTGATGGACCTGACTGGCTCCAATGACGCGGTGTACCCCGACCGGAGCAGGACTCCTGAGAAGATATTGCCCGACTACGATGTCGGTAACAAAAGAGCGTTGCACGAGTTCGCGCAGCCGTCGACCGCTGGCGGCGATGGCTCCCACTCGTTTGAACTAAAAAAGTTCACCAGTGCTACCTCAAATAAAGACTTAAATAGTAAAACTAGTAGTGTAGATAATAAACTAGAAACTGACTTCGGCGATAGCTGTTCGGTGCCGGATCTGATCTGTAACGAGAAGCCTTCCATATCGCCTTGCAGCGAGCTCTCCGAGAGCGGAGACAATTCCGTGGAGCGCACGCTGCCGTCTCCCAACCCCCAGCCGCACACCAGCGGCGTCATCATGAGGACAGAAGaggtacaattaaaaaaaaaagcacctATGAAAATAAGACTGAACAACATTTTCGTCAGAAAGAACAAAAAGATATTGCAGATAAAGAACGCAAAAGTACCGGCCGTGAGCCGGTGCGAGGTCACGCCCATCGCGTGCTCGTCCAAAAGCGTAGCACCCGAGAACTACGCGGCCGCCAAGATGGCCCTGTCACCACAACGGACCGAGAAGTCTACGCTCACGACTATTTCTATTGAGGAGATCACAGAGAAAGACGAAGATAGCTTCGACGAAATGGATGAAGTGGAAGAGGTGAAGATGCTGCCGGAGCCGGCGAAATCCGAGGCTGTCAACGTGAAAGAAGAGTTGAGCTGTAGCAACGAGTGTGCGTTCAGTAACGAAGCGCCCGGCCCGGCGCGGGATACAGGTGCCTTGGACCCGCTGCGGCCCACCACAGTCAGCTACGGCAGCATGTCTCCTTCGGACTTCGACGACGAATCCAGCAACCGCGAACTGTTGGACCTCGAGGGCGGCAAGAACAAGCAATTCGTCAACATGATGAACGACAACTACTTCGGAGATAACATATACGCGGACTACTTCACCCCGGACCGGGTCGAAGCATTTGACGACAAGGGGCCTACGGTCTTCAAAGATAACTCTAAAGAAGCGTTCTCTTGCAGCATTTGGGGAGAGCCTTCGTCGAAGGAGAACGAGTTTGTTCTCCCGAACTTCATTCACGAGAGTTATAAGATAGCGGAAAATGGGGAGTATGCCGATGGGGGGGACGTTGGGGGGGACAGCAAGGCGGATGTTTCGCCGCTGAACATATGCGCGGACGAGCGGATGCCGCCGCGCGGCGAGATCAGCGGGCAAGAAAGTAACGGAGACATGGAATCCTCCTGGAACGGGATGTACCCCGAAGTGACCCCTGCAGAGCCTTACGACCTTATGGCTCGCGAGAGCTGGGTGTCCGACGGATCAGAGCTCGACGTCACAGAGAAGAGAGACACGCTCGAGGAAGAACTGGTATTCCCCAAGGCGCGAATATACGTGTGTCAGATATGCGGTGCCAAGAACCCTTCGCTCAAGGAGTTGCGCGCCCACAGAGCAGCCGAGCACGCCTCGCCGACTTGTTCCAAGACCAGCTACAGCCGGCTGCTGACCGCGCGGGCCATCAAGAAGGAGAAGGCAGAGGACTTGTCTTGCGCTGCCAACATCCTAACAATGGACACGAAAGACAGCATTAGCTCGACGATCCTGCAAGTGTTCACTCCGGATCCGCTGGCTGAGGCGAAGCCGCCGCTGGACGAGCTGCGCGTGCCGCCCGTCCCGCCCGTCCCGCCCGTCCCGCGGCACTACATCAAGAAGGAGACCAAGAGGAAACGAAGGGACTTTGTGTGTCCCACCTGTAAGGTTGACCAGGTGACGGAGCCCCTTTTCTCAGCTCATTTAAAGATCCACCCGCTGGAATGTCTCACCTGCGGGAAGTTCTTCTCGAGGCGAGCAAACCTCAACCTCCACATCAAGACTCATCTCGGCATCAAGGACTATAAATGCGAGATCTGCTCGAAGCAGTTCATAACGCGGCAGAAGCTCGGCGAGCACCATAACACGCACACGGGCCGCGCGCCCTACAAGTGCACGCACTGCGACGACTCCTTCCGCCGGTACTCCAACATGGTGCAGCACCGCGACCGGCACCACCTGCACAAGCGCGCCAAGAGCCGCGACTTCGTGTGCCACTGCGGCGCCGTGTTCCAGTCGCGCGCCAAGTACCACTGGCACGCGGAGACGCACGCCGCCAAGCCGCGCGCCTGCGCGCACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGGCACGTGCGCCGCGCGCACAACGAGATGTACCTCTCCGCGCACACCGCGCAGAGGAACGAGAACGTCCCCTGCCCCGTTTGCAAGCAGGTAAATACAGTATACACTGCGCGCACTGCAGCGACAAGTAAATACAGTATACACTGCGCGCACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGACACGTGCGCCGCGCGCACAACGAGATGTACCTCTCCGCGCACACCACGCAGAGGAACGAGAACGTCCCCTGCCCCGTATGCAAGCAGGTGTACCTCCGCACGAACCTGCGCGCGCACCTTCTGACGCACAGCGGCAAGCGTCCCTACTCCTGCGTCGTCTGCAACAAGGCGTTCACCACCAAGTGGAACCTGAAGCTGCATCGCTGGACACACATGAGCCGCTCCGCCAAACCCTTCAAGTGCACTCTGTGCAAGGGCGCATTCATCCGACACACGGAATACATATCACACATGAACTCACACAAATCTGTCCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCAGGAAATACAACTGTCAGAGGCACGTCCGAGAACACgagatggccaagaagtttgtaTGCAACGTGCCGGAGTGCGGCAAGTCCTTCCACAGAGGTTACTACCTCTCGGAACATATGAAGGTGCACAGTGGTGCTAGACCGTTCTCGTGCGACATCTGCGACAAGACGTCGAGTAATAAATCTAATCATAATAAACATATGAAGATACATCACGCTAGGGAAATGATCGCTTCCGAGGCCTAG
Protein Sequence: MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSITKSNNSCISSRTPTPANSERSYRSRSRTPITEDSGTNPWNGTKEHERYWAQTPSASSRTPSGTSSRGGSRTPSTRTPSRTPSRTPSRTARSLSSVNISRNCTPDMRLVDNLAFENTTVSSLSQNSQSRHSNSPLLMKTDKPPRTYPPAVIPDYDQHFIDYSDQQEDREVKYSRSAEYNALDVNNMYSYNVPMIESAGKTQSIPSHTLPRKKTEQVKASSAMKSNNLLNLVKNNIGGMQCLPPYMGNRSAPYHMVANAPTFVQKNVQNSMVMTSGLPNTQVQIETKRPPLVQNHFSLATGNFTPGTTVVTQNSQYIYQEMVQNIDPKSFIPTMPPVFTGHENITNVAHAQTSSECTRMYQNVMLVDQFGNSSCMYTPQPMLSKATCAPPLFSENLSQAVNALVQKPSPVKRNPNKTLIIEVGPILPTQKGSSRSCGTNTMLSQIRVPIPNTPIISTPKPEAPSISITEKVEKIEMPGTSKGLKILSNIKVEVPVQHVKSMINTVMDLTGSNDAVYPDRSRTPEKILPDYDVGNKRALHEFAQPSTAGGDGSHSFELKKFTSATSNKDLNSKTSSVDNKLETDFGDSCSVPDLICNEKPSISPCSELSESGDNSVERTLPSPNPQPHTSGVIMRTEEVQLKKKAPMKIRLNNIFVRKNKKILQIKNAKVPAVSRCEVTPIACSSKSVAPENYAAAKMALSPQRTEKSTLTTISIEEITEKDEDSFDEMDEVEEVKMLPEPAKSEAVNVKEELSCSNECAFSNEAPGPARDTGALDPLRPTTVSYGSMSPSDFDDESSNRELLDLEGGKNKQFVNMMNDNYFGDNIYADYFTPDRVEAFDDKGPTVFKDNSKEAFSCSIWGEPSSKENEFVLPNFIHESYKIAENGEYADGGDVGGDSKADVSPLNICADERMPPRGEISGQESNGDMESSWNGMYPEVTPAEPYDLMARESWVSDGSELDVTEKRDTLEEELVFPKARIYVCQICGAKNPSLKELRAHRAAEHASPTCSKTSYSRLLTARAIKKEKAEDLSCAANILTMDTKDSISSTILQVFTPDPLAEAKPPLDELRVPPVPPVPPVPRHYIKKETKRKRRDFVCPTCKVDQVTEPLFSAHLKIHPLECLTCGKFFSRRANLNLHIKTHLGIKDYKCEICSKQFITRQKLGEHHNTHTGRAPYKCTHCDDSFRRYSNMVQHRDRHHLHKRAKSRDFVCHCGAVFQSRAKYHWHAETHAAKPRACAHCSDKFVHAASLTRHVRRAHNEMYLSAHTAQRNENVPCPVCKQVNTVYTARTAATSKYSIHCAHCSDKFVHAASLTRHVRRAHNEMYLSAHTTQRNENVPCPVCKQVYLRTNLRAHLLTHSGKRPYSCVVCNKAFTTKWNLKLHRWTHMSRSAKPFKCTLCKGAFIRHTEYISHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCNVPECGKSFHRGYYLSEHMKVHSGARPFSCDICDKTSSNKSNHNKHMKIHHAREMIASEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267528;
90% Identity: -
80% Identity: -