Prub021100.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754931.1:1464405-1468360[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0028 0.18 12.8 3.8 1 23 156 179 156 179 0.95 2 17 0.00032 0.02 15.8 1.2 1 23 188 211 188 211 0.96 3 17 0.18 11 7.1 0.3 3 23 225 246 224 246 0.97 4 17 0.00056 0.036 15.0 3.4 1 23 255 278 255 278 0.97 5 17 0.00015 0.01 16.8 1.4 2 23 290 312 289 312 0.95 6 17 6.2e-05 0.004 18.0 0.2 2 23 341 363 340 363 0.96 7 17 1.1e-05 0.00069 20.4 1.2 2 23 373 395 372 395 0.96 8 17 0.29 19 6.4 1.3 3 19 401 417 399 419 0.94 9 17 5.2e-05 0.0034 18.2 0.1 2 23 425 447 425 447 0.97 10 17 0.004 0.26 12.3 0.4 3 23 457 478 456 478 0.96 11 17 9.5e-05 0.0061 17.4 7.4 1 23 483 506 483 506 0.98 12 17 0.019 1.2 10.2 6.3 1 23 517 540 517 540 0.91 13 17 2 1.3e+02 3.8 0.4 1 23 559 582 559 582 0.88 14 17 4.4 2.8e+02 2.7 1.8 3 23 590 609 588 609 0.78 15 17 0.0055 0.36 11.9 1.7 2 23 615 636 614 636 0.97 16 17 0.0045 0.29 12.2 0.3 1 23 702 724 702 724 0.97 17 17 0.091 5.9 8.0 1.8 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGCCCCTGCCATTAGAAACTGATATAAAAGTGGAAATTGATGAGCGCAAAGACCCAACCTCCTTTCTCCCACAAGAAGAAATGAGCTACgagattaaaaagaaaaaaaagaagaagaaaaagaaacaaCAAGAAGACCCGTTCAAAGATGTAGAACAGAAGTTGTCTGTGATTCGAGAACCGGATATAACTGCATTAGATCCAGATATAGGATCCTTGGATCCTGAGGTTACAATCAAGGTTGAGGATATTGAACTGACTTTGAATATTGACGATTTCCACAAAGATGATGGTCTAATAGAGGAATCGTTCAGTGAGGGGTGCAACCAAGAACCATCCGTCAAAATAGAAGACCAGAGTCAAGACGCAGTCGTCCTAACCTTCCAAAACATAATCAGCGATAATCTAGTCAGTGACAAACTCCTCAAGAAAGAGAAGATCAAACTAGAATCATCCGGTGAAAACCATTTTTGCGAAGTCTGCCATCTAGTGTTTAAAACTGCCAAGTCCTTAGATACACATCGAAAACGGGCTCATAAGCATTACAGAAAATCGTTCGCGCATATATGCGATGACTGTGGAATGTCCTATCAGTTTAAGAATAGTCTCATTGCTCATATTAAAAGAAAACATGGCCCAGATGCAGTTAAAGACGATAAGATAGAGCGAGCTTGCGATCTGTGTGCGCTGGTGTTCAAAGGACAAGCTAGAATACGTATGCACATGAGACGAAAACACGGATTGTATGAAGACACATTTAACCACGAGTGCGAGTATTGTGGCCTCACTTATGAGAAACAGTGCAGCTTACTCGTACACATACGAAGGAAACACACTCATAAAACTAAACCGAGAAAACAATGGTTGAATTGCCCGTTTTGTGGCAGATTTTTTGACAAAAGAGAAACTTACACCCGTCATATACAGAGAAATCATCGAGTTAACGATGAAGATGGAAAGCTCAAAGACGATGATGCAGAGTTTAAACAAACATACACGAATGAGAAGACCGGAGAACTTACCTGTAACCAGTGTCCTTTAGCATTTGCCACTGTAGGCTATCTTAAATGGCATATGAGACGGAAGCACAACGCTATGATCGACGACTTTAGACTTAAGTGTAAGATTTGTAATCTGTCATATGCTAATTCGGAAAGTTTGAAGAGGCATGTGCGAAGAAAACATGATAAAGGAACTTTTTGTTACGAGTGCAATAGACAGTTTGCAGATCGGGAGACATTCTTACAACACTCTCATGCTAAAGTTGTTAGGGAGTGTACTTTATGTGGATTGATATTCGCAAGTCAGGGAGGTTTAGCAAAACATTTGAGGACCACCCACAAAATAGATGGTCCGAAAACAGTTTTCTGTCCAGTTTGCAACCAAGGATTCGTTAACAAACGCCAGTTAAAGCCACATTACAACCGCGTGCACTTAAAAGTGACCTACACGTGTAAGTTCTGCAGCAAAGTGTTTAAAACCAGAGAGTGTTATCGAAAGCATATGATGACAAAACATCCGACGCCTTCCACCGATGAAACCAAAATGCACCAATGTGAAAAGTGTCCGGAGAGCTTTTGCGATGAATTCGAACTTTGCAAGCATAATAACTTTATACACGGGGATATAAAACCTcttgttattaaaaaagaagaaggtGATATCAAAAATATCTTCAAATGCACTAAATGTATCGATGAGTATGAGACTTGGGATTTGTTGCGAGCTCATTTCGAGCAGACCCATCTTCTGATCGAGGAAGTACAATGTCAGATTTGTGGAGGCTTGATGAGTAGAGGCGAGTTGGTCAAACACATGAAAATCCACGACGAAATTGAGGTGCAGTGTCGATTCTGTGAGTACAAAAGTAAAAATCGTGTCAGTCTGACGCAGCATATGCTAAGACACAAAAATGCTACAACGCTTAACTGTGATTACCCGAACTGTAGATATAAAACGTTTTACGATCATGCAATGGTGAAACATAAGAAGAGGCATCAAGAGTTAGGTGTGAAATTACAGTGTGCGAGTTGCCCATTCCAAACTATGAACAAATACATCTTAAGGTATCACGAAGAGGCACATCTGACGGGCAAGAAACGGTACAAGTGTGACAAATGTGACTATGCTACGATACTGCCAGCGAACCTAGTTCAACATAAGTATAAGCATTCTGTTGAGAAGAGGTTTAAGTGTGAGGTGTGCCCGTTTGCAACTAAGTATAACACGTCATTGCGATTTCATGTTAAGACGAAACACTGTGATCTTCCGAGTATGAGTAAGGATTGA
- Protein Sequence
- MPLPLETDIKVEIDERKDPTSFLPQEEMSYEIKKKKKKKKKKQQEDPFKDVEQKLSVIREPDITALDPDIGSLDPEVTIKVEDIELTLNIDDFHKDDGLIEESFSEGCNQEPSVKIEDQSQDAVVLTFQNIISDNLVSDKLLKKEKIKLESSGENHFCEVCHLVFKTAKSLDTHRKRAHKHYRKSFAHICDDCGMSYQFKNSLIAHIKRKHGPDAVKDDKIERACDLCALVFKGQARIRMHMRRKHGLYEDTFNHECEYCGLTYEKQCSLLVHIRRKHTHKTKPRKQWLNCPFCGRFFDKRETYTRHIQRNHRVNDEDGKLKDDDAEFKQTYTNEKTGELTCNQCPLAFATVGYLKWHMRRKHNAMIDDFRLKCKICNLSYANSESLKRHVRRKHDKGTFCYECNRQFADRETFLQHSHAKVVRECTLCGLIFASQGGLAKHLRTTHKIDGPKTVFCPVCNQGFVNKRQLKPHYNRVHLKVTYTCKFCSKVFKTRECYRKHMMTKHPTPSTDETKMHQCEKCPESFCDEFELCKHNNFIHGDIKPLVIKKEEGDIKNIFKCTKCIDEYETWDLLRAHFEQTHLLIEEVQCQICGGLMSRGELVKHMKIHDEIEVQCRFCEYKSKNRVSLTQHMLRHKNATTLNCDYPNCRYKTFYDHAMVKHKKRHQELGVKLQCASCPFQTMNKYILRYHEEAHLTGKKRYKCDKCDYATILPANLVQHKYKHSVEKRFKCEVCPFATKYNTSLRFHVKTKHCDLPSMSKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429284;
- 90% Identity
- iTF_00638894;
- 80% Identity
- -